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Prune

Prune

Jun 03, 2015

Prune

Prune allows one to eliminate markers or traits. It removes the data from the file containing the cross and reconstructs the molecular map.

Quick Start

  • To use Prune, upload your data in the same format as the output of Rcross. Prune also requires a molecular map in the same format of Rmap outputs.
  • Resources: documentation

Test Data

All files are located in the Community Data directory of the iPlant Discovery Environment at the following path:

Community Data > iplantcollaborative > example_data > prune

Input File(s)

  • Use qtlcart.cro files as input.
  • Use qtlcart.map files as input.

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

  • Expect qtlcart.crb as output.
  • Expect qtlcart.log as output.

Tool Source for App