JZmapqtl

Owned by mhelmke
Last updated: Jul 19, 2012 by NicoleHVersion comment

JZmapqtl

JZmapqtl implements interval and composite interval mapping for multiple traits.

Quick Start

  • To use JZmapqtl, upload your data in the same format as the output Rcross. JZmapqtl requires a molecular map in the same format of Rmap outputs. In addition, the program requires the results of the stepwise linear regression analysis of SRmapqtl for composite interval mapping.
  • Resources: documentation

Test Data

All files are located in the Community Data directory of the iPlant Discovery Environment at the following path:

Community Data > iplantcollaborative > example_data > jzmapqtl

Input File(s)

  • Use qtlcart.cro as input (trait data)
  • Use qtlcart.map as input (map data)
  • Use qtlcart.eqt as input (Eqtl results for model 7)
  • Use qtlcart.sr as input. (SRmappqtl Results for Modle 6)

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

  • Default parameters only, no further configuration needed.

Output File(s)

  • Expect qtlcart.z0 and qtlcart.z1 as output.
  • Expect qtlcart.log and qtlcart.rc as output.

Tool Source