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Discovery Environment Applications List

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Standard File Format Testing and Conversion Tools (archived)
Random Jungle 2 (archived)
VCF to GFF3 documentation (archived)
Prodigal (archived)
AdjustPvalue 0.0.1 (archived)
CloudSTRUCTURE (archived)
Autodock Vina (archived)
1000 Bulls GATK Genotyping 1.00 (archived)
ABySS Short Read Assembler (archived)
Agbase GOanna 1.02 (archived)
Agbase GOanna 2.03 (archived)
AgMIP QuadUI (archived)
1000 Bulls GATK Genotyping (archived)
BEDTools annotateBed (archived)
BEDTools bedToBam (archived)
BEDTools closestBed (archived)
BEDTools clusterBed (archived)
BEDTools complementBed (archived)
BEDTools flankBed (archived)
BEDTools getOverlap (archived)
BEDTools groupBy (archived)
BEDTools mergeBed (archived)
BEDTools multiBamCov (archived)
BEDTools multiIntersectBed (archived)
BEDTools nucBed (archived)
BEDTools shuffleBed (archived)
BEDTools sortBed (archived)
BEDTools subtractBed (archived)
BEDTools windowBed (archived)
Bismark 0.7.4 (archived)
Bismark Genome Preparation 0.7.4 (archived)
Bismark Methylation Extractor 0.7.4 (archived)
Blastp-2.2.26 (archived)
BLASTX Contig Annotation (Stage 2) (archived)
Blat_the_most_basic_version (archived)
BWA 0.5.9 (archived)
BWA 0.59 (Paired-End Illumina Reads) (archived)
cd-hit 4.6.1 (archived)
CD-HIT-EST (archived)
CD-HIT-EST-2D-ISU-GROUP-D (archived)
Change Case (archived)
CONTRAST (archived)
Convert standard files for AntEpiSeeker (CvtAntEpiSeeker) (archived)
Convert standard files for Fast-LMM (CvtFastlmm) (archived)
Convert standard files to Random Jungle format (CvtRandomJungle) (archived)
Copy of Agbase GOanna 1.02 (archived)
Copy of Infernal Stage 4 (cmsearch) (archived)
Create BAM from SAM file (archived)
CuffCompare (archived)
Cuffdiff2a (archived)
cufflinks2gff3 (archived)
DACE (archived)
demultiplex samples (archived)
de novo construction genetic map (archived)
Detect text file types (archived)
Disparity through Time (archived)
DNAML (archived)
EBI Interproscan (Web Service) (archived)
EBI Interproscan 1.0.1 (Web Service) (archived)
eFP Batch Retrieve (archived)
EMBOSS backtranseq (archived)
EMBOSS Biosed (archived)
EMBOSS Charge (archived)
EMBOSS Checktrans (archived)
EMBOSS Codcmp (archived)
EMBOSS Coderet (archived)
EMBOSS Compseq (archived)
EMBOSS Cpgreport (archived)
EMBOSS Cutseq (archived)
EMBOSS Degapseq (archived)
EMBOSS Descseq (archived)
EMBOSS Dreg (archived)
EMBOSS Einverted (archived)
EMBOSS Equicktandem (archived)
EMBOSS Est2genome (archived)
EMBOSS Etandem (archived)
EMBOSS Extractfeat (archived)
EMBOSS Extractseq (archived)
EMBOSS Fuzznuc (archived)
EMBOSS Fuzzpro (archived)
EMBOSS Fuzztran (archived)

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Change Case (archived)

Updated Aug 09, 2016

Change Case (archived)

Aug 09, 2016

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Change Case (archived)

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