Index fasta file (Samtools 1.7 faidx)
Index fasta file (Samtools 1.7 faidx)
Creates an index for a fasta file.
Quick Start
- To use Index fasta file (Samtools 1.7 faidx), import your data in fasta format.
- Resources: https://github.com/samtools/samtools
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Samtools_faidx
Input File(s)
Use the fasta file, NC_010473.fa from the directory above as test input.
Parameters Used in App
There are no parameters to set for this app.
Output File(s)
Expect a fasta index file named after the input file name. In the test, case, the name is NC_010473.fa.fai
Tool Source for App