Index fasta file (Samtools 1.7 faidx)

Index fasta file (Samtools 1.7 faidx)

Creates an index for a fasta file.

Quick Start

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> Samtools_faidx

Input File(s)

Use the fasta file, NC_010473.fa from the directory above as test input.

Parameters Used in App

There are no parameters to set for this app.

Output File(s)

Expect a fasta index file named after the input file name. In the test, case, the name is NC_010473.fa.fai

Tool Source for App