Discovery Environment Applications List

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EMBOSS Einverted (archived)
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EMBOSS Equicktandem (archived)
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EMBOSS Est2genome (archived)
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EMBOSS Etandem (archived)
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EMBOSS Extractfeat (archived)
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EMBOSS Extractseq (archived)
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EMBOSS Fuzznuc (archived)
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EMBOSS Fuzzpro (archived)
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EMBOSS Fuzztran (archived)
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EMBOSS Geecee (archived)
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EMBOSS Getorf (archived)
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EMBOSS iep (archived)
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EMBOSS Maskseq (archived)
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EMBOSS Matcher (archived)
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EMBOSS Megamerger (archived)
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EMBOSS Msbar (archived)
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EMBOSS Needle (archived)
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EMBOSS Newcpgreport (archived)
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EMBOSS Pepstats (archived)
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EMBOSS Notseq (archived)
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EMBOSS Prettyplot (archived)
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EMBOSS Prettyseq (archived)
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EMBOSS Revseq (archived)
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EMBOSS Showfeat (archived)
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EMBOSS Sigcleave (archived)
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EMBOSS siRNA (archived)
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EMBOSS Sixpack (archived)
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EMBOSS Splitter (archived)
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EMBOSS Supermatcher (archived)
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EMBOSS Tcode (archived)
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EMBOSS Textsearch (archived)
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EMBOSS Tranalign (archived)
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EMBOSS Trimest (archived)
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EMBOSS Trimseq (archived)
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EMBOSS Vectorstrip (archived)
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EMBOSS Wordcount (archived)
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EvoFold (archived)
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FastLMM (archived)
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FASTQ quality filter and trim (archived)
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XYPlot 0.0.1 (archived)
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TASSEL 4.3.0 (MLM) (archived)
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Structure2Tassel 0.0.1 (archived)
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NumericalTransform 0.0.1 (archived)
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Filter Genotypes v1 (archived)
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Find orthogroups by sequence similarity 0.1 (archived)
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Find Unique Values (archived)
Forward_Regression-0.0.1 (archived)
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GeneMania Query Runner (archived)
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Generalized linear regression in R (archived)
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GeneMania Query Runner 3.1 (archived)
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GLMstructure (archived)
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GLM Workflow (archived)
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gluH2P (archived)
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Homolog Resolution Service (archived)
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Infernal Stage 1 (cmbuild) (archived)
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Infernal Stage 2 (cmalign) (archived)
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Infernal Stage 3 (cmcalibrate) (archived)
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Infernal Stage 4 (cmsearch) (archived)
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LD_Plot (archived)
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Linear regression in R (archived)
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Lopper (archived)
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Mermasker (archived)
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MrBayes 3.2.1 MPI Basic App (archived)
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Muscle Named Outputs (archived)
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NCBI SRA Toolkit fastq-dump (archived)
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Ornstein-Uhlenbeck models (archived)
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PGDSpider convert data to different population genomics formats (archived)
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Phylogenetics Muscle-PhyML (archived)
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Picante (archived)
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GLM_TASSEL 4.3.1 (archived)
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QTLC workflow (archived)
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QTLC Workflow2 (archived)
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radtag demultiplex samples (archived)
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Random Jungle 2.0.0 (archived)
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Rename a file (archived)
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RAxML - Nucleotides (archived)
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RAxML - Proteins (archived)
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RNAfold (archived)
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samtools_Sam_noheader_2Bam (archived)
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SAMTOOLS-0.1.19 SAM-to-BAM-sans-header (archived)
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SAMTOOLS-0.1.19 SORT BAM (archived)
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SCARF (archived)
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Select Markers to Keep v1 (archived)
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Qxpak (archived)
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SOAP 2.21 (archived)
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SOAP2 Aligner for Paired-End Illumina Reads (archived)
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SOAP2 Aligner for Single-End Illumina Reads (archived)
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Soapdenovo-1.05 (archived)
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SOAPdenovo-2 (archived)
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SPA-1.0.0-Dev (archived)
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structure software (archived)
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Structure v. 2.3.3 (archived)
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Subset Reference Tree (archived)
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Tallymer-mkindex (archived)
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Tallymer-occratio (archived)
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Tallymer-search (archived)
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Tophat-SE (archived)
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FastQC 0.10.1
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tophat-2.1.1, tophat-2.1.0, and TopHat2-PE (archived)
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TopHat Aligner for Single-End Illumina Reads (Custom Genome) (archived)
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TopHat Aligner for Single-End Illumina Reads (archived)
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TopHat Aligner for Paired-End Illumina Reads (archived)
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TopHat Aligner for Paired-End Illumina Reads (Custom Genome) (archived)
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TopHat2-SE (archived)
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Tophat-SE-PE (archived)
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Scythe-adapter-trimming (archived)
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MetaGeneMark 2.26.0 (archived)

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Discovery Environment Applications List

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Deprecated Apps Documentation

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SAMTOOLS-0.1.19 SORT BAM (archived)

SAMTOOLS-0.1.19 SORT BAM (archived)

Owned by de-confluence

Last updated: Aug 15, 2016 by kkennedy

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