Rename contigs 2.0
Adds to or replaces contig names.
- To use Rename contigs 2.0, import your data in fasta format, and a 2-column tab-delimited file where the first column matches the fasta files headers.
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> rename_contigs -> inputs
Use BAt_transcripts_cds.fa and cutWrapper_output.txt from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
Set the output file name to BA_transcripts_annotated.fasta
Set the type of output to replace
Expect an output fasta file named BA_transcripts_annotated.fasta.