khmer 3.0.0a1 filter-abund

filter to remove low abundance k-mers

Quick Start

To use khmer 3.0.0a1 filter-abund, import your data in fastq format.
Resources: http://khmer.readthedocs.io/en/v2.1.1/user/scripts.html#scripts-read-handling

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> khmer

Input File(s)

Use these file and test input:

countgraph_19

e_coli_1000_1.fq

e_coli_1000_2.fq

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s).

Use these parameters within the DE app interface:
- set the low