khmer 3.0.0a1 filter-abund
filter to remove low abundance k-mers
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> khmer
Use these file and test input:
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s).
- Use these parameters within the DE app interface:
- set the low abundance coverage cutoff to '2'
- set the output filename to 'filter-abund_output.fq'
Expect a fastq file named 'filter-abund_output.fq'
Tool Source for App