LD (Tassel4)
- de-confluence
- Liya Wang
Owned by de-confluence
LD (Tassel4)
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Quick Start
- To use LD (Tassel4), import your data in HAPMAP/PLINK/FLAPJACK/PHYLIP format.
- Resources: http://www.maizegenetics.net/tassel/
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> ld -> input.
Input File(s)
Use MAB1_ct5.chr1.hmp.txt from the directory above as test input.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.
- Default parameters only, no further configuration needed.
Output File(s)
Expect a text file as output. For the test case, the output file you will find under Community Data -> iplantcollaborative -> example_data -> ld -> output. is named output.txt.