Runs Blat with default settings and converts the output to BAM format.
Description and Quick Start
This is a workflow between Blat with psl output and SAM to BAM. There is a Blat step, then it uses script to convert psl files produced by BLAT into the SAM file format, and then the SAM file is converted to a BAM file.
Input a fasta file, seqret.output
A SAM file, and a BAM file.