vcftools-concat 0.1.16
Concatenates VCF files (for example split by chromosome). Note that the input and output VCFs will have the same number of columns, the script does not merge VCFs by position
Quick Start
To use vcftools-concat 0.1.16, import your data in vcf format (may be gzipped)
Resources: https://vcftools.github.io/perl_module.html#vcf-concat
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data ->vcftools
Input Files
Use:
20150518-173953-GVCF_Chr01.vcf.gz
20150518-173953-GVCF_Chr02.vcf.gz
Parameters
There are no required parameters.
Output Files
This analysis should generate one output file; a merged VCF file made from the input files:
merged.vcf
Tool Source for App
https://vcftools.github.io/perl_module.html#vcf-concat