TPM calculator 0.0.3

TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files.

Quick Start

• To use TPM calculator 0.0.3, import a GTF file of reference gene annotations and one or more BAM files of mapped sequence data

• Resources: https://github.com/ncbi/TPMCalculator

Test Data

Input Files

Use:

• reference.gtf

• bam_files (folder)

Parameters

There are no required parameters.

Output Files

This analysis should generate three output files for each input:

• sample1_genes.ent

• sample1_genes.out

• sample1_genes.uni

• sample2_genes.ent

• sample2_genes.out

• sample2_genes.uni

Tool Source for App

https://github.com/ncbi/TPMCalculator