BCFtools 1.8 query

Quick StartTo use BCFtools 1.8 query, import your data in VCF format along with the corresponding index files.

• Resources: https://github.com/samtools/bcftools

Test Data

Input File(s)

Use these files from the directory above as test input.

• SRR946914.vcf.gz
• SRR946914.vcf.gz.csi

Parameters Used in App

When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the next section below.

• All parameters can be left as default.

Output File(s)

Expect output.vcf as output. It should contain only the fields specified in the output format field.

Tool Source for App

• https://github.com/samtools/bcftools