Apps are the mechanism you use in the DE to submit your analysis. See Using the Apps Window and Submitting an Analysis for information on submitting an analysis and navigating within the Apps window.

You can view information about the app interface and the tool (executable or binary) used for the app in the Information window.

For an overview of the Apps window menus, see Using the Apps Window and Submitting an Analysis.

Viewing an app

Once you have identified the app to use, click it to open the app window.

Each app has a basic set of standard interface elements, as shown in this example of FASTX quality filter:

Main steps to submitting an analysis

This is a brief overview of the main steps required to submit an analysis.

Before you begin, you may want to view a video about running analyses in the Discovery Environment. Please note that this is for release version 1.6, and may look and function differently from this release.

1. In the Apps window, click to open the app to use.
2. Select the input data file or files and specify the settings.
3. Launch the analysis.
4. View progress of the analysis in the Notifications list.
5. When the analysis is completed, review the results in the Analyses window, including:
   • View outputs or results of analyses
   • Manage or delete data
   • Delete analyses outputs
   • Troubleshoot failed analyses

See Submitting an Analysis for more complete steps.