2012 06 28 TSW Auburn University
Note:
Per Sheldon, this is not an 'official' iPlant TSW, as it was not organized by iPlant, he only presented on RNA-seq, and the costs, including Sheldon's, were covered by the Genetics in Aquaculture Symposium organizers.
iPlant Organizer: |
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Sponsor: |
Genetics in Aquaculture Symposium |
Local Point of Contact: |
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Trainer (iPlant): |
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Date: |
6:30-9:30 PM, June 28, 2012 |
Location: |
Ballroom 1 |
Page Contents
Goal
The goal of this workshop is to demonstrate some of the ways that iPlant Cyberinfrastructure can advance your scientific objectives. As you navigate the through demonstrations and hands-on activities presented at the workshop, you will gain a sense of how to use iPlant tools and services for your investigations.
Agenda
Please check here for the latest updates to this workshop agenda
Thursday June 29
Time |
Presentation |
Slides |
Links |
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6:30 PM -7:00 PM |
Introduction and Discovery Environment (DE) Walk through |
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7:00 PM - 8:00 PM |
RNA-seq in the in the DE |
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8:00 PM - 8:30 PM |
Visualizing RNA-Seq data in Atmosphere |
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8:30 PM - 9:00 PM |
Phylogenetics and building Workflows in the DE |
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9:00 PM - 9:30 PM |
Questions and Discussion |
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Pre-Workshop Homework
At least 48 hours before the workshop, please register for an iplant user account at http://user.iplantcollaborative.org.
Once you have registered, please be sure to request access to Atmosphere, our cloud computing platform. These requests take at least 24 hours to process.
- Please make sure you have the latest version of your web browser. Firefox is preferred but most browsers are supported. You may find browsers at the links below:
- Firefox (preferred): http://www.mozilla.org/en-US/firefox/new/
- Google Chrome:https://www.google.com/chrome
- Safari:http://www.apple.com/safari/
- Please try out your iPlant credentials to ensure you have access. You can Log-in from user.iplantcollaborative.org, click the button "iPlant Login"
- Once authenticated click the "My Services" link
- Under "My Services" please ensure you have access to: Atmosphere, Discovery Environment, iPlant Data Store. You can also request access to other services here
- If you have account problems, please email support@iplantcollaborative.org
Workshop Notes
Here are a few important links that you may wish to refer to during and after the workshop:
Account/Password Problems http://user.iplantcollaborative.org
iPlant Help and Discussion Forums
General iPlant Support Issues
iPlant Privacy (And other) policies - "Your Data is Your Data"