2013 01 28 HIP Hackathon
Organizers | |
|---|---|
Administrative Assistance | |
Date | Jan 28 - Feb 1, 2013 |
Meeting Location | Tucson, AZ; Keating/BIO5 Rm 103; Breakouts in 433, 409, 107, 109 |
Other Links | slideshow |
Important Dates | Invitations Sent: |
Goal of this Hackathon
To take another step toward providing computable, convenient, credible access to the Tree of Life by:
Providing knowledge of workflows and downstream uses of trees
Designing user interfaces
Testing software
Making screencasts, develop tutorials, and document user experiences
Background
An implicit promise of the Tree of Life project is that, ultimately, expert knowledge of species phylogeny will be accessible and usable by everybody. In other words, we will all be able to get the species trees we need, in a useable form, when we need them. The Phylotastic project aims to make that vision a reality, by developing a loosely coupled system of components that, in response to a user’s query (a list of taxa plus conditions), will rectify names, find suitable source trees, prune and graft to get the right species, estimate branch lengths, and return the results with metadata on sources and methods.
In June 2012, the HIP (Hackathons, Interoperability, Phylogenies) working group of NESCent staged a hackathon (http://en.wikipedia.org/wiki/Hackathon) to prototype components of a Phylotastic system, and implement demos to show their potential. Thanks to 25 participants who responded to an open call (just like this one), that hackathon was an extraordinary success (see http://phylotastic.org/).
Agenda
Day | Time | What | Room |
|---|---|---|---|
Monday, Day 1 | 8:30 AM | Kickoff | Keating 103 |
| 9 - 10 AM | Webex call with remote participants | " |
| 10 - 12 Noon | Presentations | " |
| Noon - 1 | Lunch delivered | " |
| 1-4 PM | Presentations | " |
| 4-5 PM | Webex call with remote participants | " |
Tuesday, Day 2 | 8:30 AM | Work | Keating 103 |
| 9 - 10 AM | Webex call with remote participants | " |
| 10 - 12 Noon | Work | " |
| Noon - 1 | Lunch delivered | " |
| 1-4 PM | Work | " |
| 4-5 PM | Webex call with remote participants | " |
Wednesday, Day 3 | 8:30 AM | Work | Keating 103 |
| 9 - 10 AM | Webex call with remote participants | " |
| 10 - 12 Noon | Work | " |
| Noon - 1 | Lunch delivered | " |
| 1-4 PM | Work | " |
| 4-5 PM | Webex call with remote participants | " |
Thursday, Day 4 | 8:30 AM | Breakout Work as assigned | Keating 107, 107, 409, 433 |
| 9 - 10 AM | Webex call with remote participants | 433 |
| 10 - 12 Noon | Breakout Work | as assigned |
| Noon - 1 | Lunch delivered | Patio 4th floor |
| 1-4 PM | Breakout Work | 103 |
| 4-5 PM | Webex call with remote participants | 103 |
Friday, Day 5 | 8:30 AM | Breakout Work as assigned | Keating 107, 107, 409, 433 |
| 9 - 10 AM | Webex call with remote participants | 433 |
| 10 - 12 Noon | Breakout Work | as assigned |
| Noon - 1 | Lunch delivered | Patio 4th floor |
| 1-2 PM | Breakout Work | 103 |
| TBA | Webex call with remote participants? | 103 |
Webex Call In Info
AM Sessions (9 AM MST)
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Meeting information
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Topic: HIP Hackathon (Naim)
Date: Every 1 day, from Monday, January 28, 2013 to Friday, February 1, 2013
Time: 9:00 am, Mountain Time (Arizona, GMT-07:00)
Meeting Number: 623 908 546
Meeting Password: iPC123
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To start or join the online meeting
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Go to https://iplant.webex.com/iplant/j.php?ED=223005982&UID=485500568&PW=NOWI3YzNiMjc3&RT=MiM1
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Audio conference information
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To receive a call back, provide your phone number when you join the meeting, or call the number below and enter the access code.
Call-in toll-free number (US/Canada): 1-877-668-4493
Call-in toll number (US/Canada): 1-650-479-3208
Global call-in numbers: https://iplant.webex.com/iplant/globalcallin.php?serviceType=MC&ED=223005982&tollFree=1
Toll-free dialing restrictions: http://www.webex.com/pdf/tollfree_restrictions.pdf
Access code:623 908 546
PM Sessions (4 PM MST)
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Meeting information
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Topic: HIP Hackathon PM (Naim)
Date: Every 1 day, from Monday, January 28, 2013 to Friday, February 1, 2013
Time: 4:00 pm, Mountain Time (Arizona, GMT-07:00)
Meeting Number: 623 352 361
Meeting Password: iPC123
-------------------------------------------------------
To start or join the online meeting
-------------------------------------------------------
Go to https://iplant.webex.com/iplant/j.php?ED=223006402&UID=485500568&PW=NNmQ4MjczMDBh&RT=MiM1
-------------------------------------------------------
Audio conference information
-------------------------------------------------------
To receive a call back, provide your phone number when you join the meeting, or call the number below and enter the access code.
Call-in toll-free number (US/Canada): 1-877-668-4493
Call-in toll number (US/Canada): 1-650-479-3208
Global call-in numbers: https://iplant.webex.com/iplant/globalcallin.php?serviceType=MC&ED=223006402&tollFree=1
Toll-free dialing restrictions: http://www.webex.com/pdf/tollfree_restrictions.pdf
Access code:623 352 361
Participant List
Name | Affiliation | Flight Info | Lodging Confirmation No. | Dietary Restrictions? | VIF | |
|---|---|---|---|---|---|---|
Julie Allen | juliema@illinois.edu | University of Illinois | 1/27 arr AA1363 @ 12:40 PM | 24479153 |
| X |
Joachim Baran | joachim.baran@gmail.com | Ontario Institute for Cancer Research | 1/27 arr AA 1379 @ 9:05 PM | 24477653 |
| X-Germany |
Carl Boettiger | cboettig@gmail.com | UC Santa Cruz | Remote | NA |
| N/A |
Scott Chamberlain | myrmecocystus@gmail.com | Simon Fraser University | 1/27 arr USAirways 2829 @ 8:37 PM | 24476153 | Veg | X |
Karen Cranston | karen.cranston@nescent.org | NESCent | 1/26 arr DL 1027 @ 6:47 PM | 24557903 | Veg | X |
Mercedes Gosby | mercedes.gosby@nescent.org | NESCent | 1/27 arr AA1463 @ 3:50 PM | 24477153 |
| X |
Cody Hinchliff | codiferous@gmail.com | University of Michigan | 1/27 arr USAIrways 2831 @ 9:49 PM | 24479403 |
| X |
Mark Holder | mtholder@ku.edu |
| Remote | N/A |
| N/A |
Daisie Huang | daisieh@gmail.com | Univ of British Columbia | driving from LA | 24475904 |
| X |
Gregory Jordan | gjuggler@gmail.com | unaffiliated | 1/27 arr DL 1067 @ 1:48 PM | 24475656 |
| X-needs sig |
Hilmar Lapp | hlapp@nescent.org | NESCent | 1/27 arr AA 1463 @ 3:50 PM | 24476654 | Veg | X |
Andrew Lenards | lenards@iplantcollaborative.org | iPlant Collaborative | Local | N/A |
| N/A |
Dan Leehr | dan.leehr@nescent.org | NESCent | 1/27 arr AA 1379 @ 9:05 PM | 24478903 |
| X |
Naim Matasci | nmatasci@iplantcollaborative.org | University of Arizona | Local | N/A |
| N/A |
Benjamin Morris | ben@bendmorris.com | University of North Carolina |