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iPlant Resources for Field-based High Throughput Phenotyping Workshop

iPlant Resources for Field-based High Throughput Phenotyping Workshop

Jul 21, 2014

Supplemental Resources for Field-based High Throughput Phenotyping Workshop

iPlant presentation, April 9, 2014

Maricopa Agricultural Center

Upload data via DE

some sample files to upload from URL:

ftp://ftp.ensembl.org/pub/release-67/fasta/canis_familiaris/dna/Canis_familiaris.BROADD2.67.dna_rm.chromosome.MT.fa.gz

http://palea.cgrb.oregonstate.edu/viewsvn/Poc/trunk/associations/po_anatomy_gene_Petunia_sgn.assoc?revision=1592

Workflow tutorial

Tutorial slides

input data for example workflow:

Community Data > iplant_training > intro_phylogenetics > 01_input_data > atpB.fa

Uploading Data

?iDrop Destop

Using iDrop Desktop to sync files between the Data Store and your desktop

iCommands

?Using iCommands to manage data

References:

iPlant home page: http://www.iplantcollaborative.org/

?Getting Started with CyVerse Home

?Downloading and Uploading Data

?Using iCommands

Discovery Environment: http://preview.iplantcollaborative.org/de/

Discovery Environment Manual

Atmosphere: https://atmo.iplantcollaborative.org/login/

Atmosphere Manual

Bisque: http://bisque.iplantcollaborative.org