2012 09 24 TSW U Missouri
Organizers | |
|---|---|
Local Point of Contact | |
Trainers | Sheldon McKay, Jason Williams, Zhenyuan Lu, Christos Noutsos |
Date | September 24-25, 2012 |
Location | Life Science Center, Rm 171 (available starting 8 AM on 9/24) - max seating 24 |
Catering Contact | Catalyst snack bar is located in LSC; |
Designated Lodging for Trainers | |
Flyer/Listings |
Page Contents
Pre-Workshop Homework
1. Please try out your iPlant credentials to ensure you have access. You can Log-in from user.iplantcollaborative.org, click the button "iPlant Login"
Once authenticated click the "My Services" link
Under "My Services" please ensure you have access to: Atmosphere, Discovery Environment, iPlant Data Store. You can also request access to other services here
If you have account problems, please email support@iplantcollaborative.org
2. Please be sure that your name is listed in the Attendee List (below) for the workshop section(s) you were accepted to. If there is a discrepancy, please email 411@iplantcollaborative.org
3. Please check your email, and this wiki prior to the workshop, as this is the way we will communicate any important changes.
4. If you are attending any sessions on day 2 please bring your own laptop!
Workshop Notes
Here are a few important links that you may wish to refer to during and after the workshop:
Account/Password Problems http://user.iplantcollaborative.org
iPlant Help and Discussion Forums
General iPlant Support Issues
iPlant Privacy (And other) policies - "Your Data is Your Data"
Goal
The goal of this workshop is to demonstrate some of the ways that iPlant Cyberinfrastructure can advance your scientific objectives.
As you navigate the through demonstrations and hands-on activities presented at the workshop, you will gain a sense of how to consume
and customize iPlant tools and services for your investigations.
Agenda
Please check here for the latest updates to this workshop agenda
Monday September 24
Time | Presentation | Slides | Links | Trainer |
|---|---|---|---|---|
08:00 AM - 08:30 AM | Arrive/Sign-in |
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08:30 AM - 09:00 AM | Welcome - Presenter/Participant Introductions |
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09:00 AM - 09:20 AM | An Overview of the iPlant Collaborative | | ||
09:20 AM - 09:45 AM | Overview of the iPlant Discovery Environment (DE) |
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09:45 AM - 10:15 AM | iPlant Data Store - Managing "Big Data" | | Jason Williams | |
10:15 AM - 10:30 AM | Coffee Break (delivered) |
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10:30 AM - 11:00 AM | Building and Using Workflows Within the DE; Phylogenetics | | Sheldon McKay | |
11:00 AM - 12:00 PM | Extending the DE for Your Research: Tool Integration and Customization |
| Jason Williams | |
12:00 PM - 12:30 PM | Lunch (delivered) |
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12:30 PM - 01:30 PM | Atmosphere - Custom Cloud Computing | | Jason Williams | |
01:30 PM - 02:30 PM | Using the DE to Examine Differential Expression Within an RNA-seq Dataset |
| Sheldon McKay | |
02:30 PM - 03:30 PM | Collaborating with iPlant: Future Projects and Workshop Summary |
| | Jason Williams |
POST-WORKSHOP Survey Link:
http://www.surveymonkey.com/s/ToolsServices_post
Tuesday September 25
Time | Presentation | Sides | Links | Trainer |
|---|---|---|---|---|
09:00 AM - 09:30 AM | Set up resources for advanced RNA-Seq and API tutorials |
| Sheldon McKay | |
09:30 AM - 11:00 AM | Powered by iPlant - Consuming iPlant Services in Your Portals |
| Sheldon McKay | |
11:00 AM - 12:00 PM | Advanced RNA-Seq: Visual Analytics in Atmosphere |
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| Sheldon McKay |
12:00 PM - 01:00 PM | Lunch (delivered) |
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01:00 PM - 01:30 PM | Advanced RNA-Seq (Cont'd) |
| Sheldon McKay | |
1:30 PM - 1:40 PM | iplant collaboration with Soybean Genomics Center |
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| Christos Noutsos |
01:40 PM - 02:30 PM | Using XCEDE for bioinformaics | |
| Sheldon McKay |
02:30 PM - end | Open discussion |
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| All |
Attendee List
Name | Research Area | Institution | User Acct | |
|---|---|---|---|---|
Jacob Washburn | washjakepf@yahoo.com | Plant Biology | UMo | needs Atmo |
Tatiana Arias | tatiana.tatianaarias@gmail.com | Plant Biology | UMo | needs Atmo |
Jinrong Wan CANCELLED | wanj@missouri.edu | Plant Biology | UMo | needs all |
Christopher Bottoms | bottomsc@missouri.edu | Bioinformatics | UMo | X |
Bill Spollen | spollenw@missouri.edu | Bioinformatics | UMo | needs Atmo |
Christopher Childers | genetics.guy@gmail.com | Bioinformatics | UMo | X |
Clayton Coffman CANCELLED | cmcz7b@mizzou.edu | Chemical Ecology | UMo | needs Atmo |
Jingfen Zhang | zhangjingf@missouri.edu | Bioinformatics | UMo | needs acct |
Trupti Joshi | joshitr@missouri.edu | Bioinformatics | UMo | needs Atmo |
Saad Khan | smk5g5@mail.missouri.edu | Bioinformatics | UMo | needs all |
Brent Buckner | bbuckner@truman.edu | Genetics and Nucleic Acids | Truman State University | X |
Yongqin Wang | wangyq@missouri.edu | Plant Biology | UMo | needs Atmo |
Chenglin Chai | chenglin.ch@gmail.com | Plant Biology | UMo | needs Atmo |
Li Lin | linl@missouri.edu | Biochem and Molecular Structure-Function | UMo | X |
Chao Zhang | chaozhang@mizzou.edu | Computer and Computation Research | UMo | needs Atmo |
Michael McMullen | mcmullenm@missouri.edu | Genetic and Nucleic Acids | UMo | X |
Alejandro Tovar-Mendez | tovarmendeza@missouri.edu | Biochem and Molecular Struc-Function | UMo | needs all |
Kate Guill | guillk@missouri.edu | Plant Biology | USDA/UMo | X |
Colin Smith-Hammond | | Biochemistry | UMo | X |
Doug Bryant | dbryant@danforthcenter.org |