2012 10 12 TSWeb Berkeley Labs
Organizers |
Jason Williams, Yvette Piceno |
---|---|
Local Point of Contact |
Yvette Piceno |
Trainers |
Jason Williams, Sheldon McKay |
Date |
October 12, 2012 |
Location |
webinar |
Flyer |
|
Page Contents
Pre-Workshop Homework
1. Please try out your iPlant credentials to ensure you have access. You can Log-in from user.iplantcollaborative.org, click the button "iPlant Login"
- Once authenticated click the "My Services" link
- Under "My Services" please ensure you have access to: Atmosphere, Discovery Environment, iPlant Data Store. You can also request access to other services here
- If you have account problems, please email support@iplantcollaborative.org
2. Please be sure that your name is listed in the Attendee List (below) for the workshop section(s) you were accepted to. If there is a discrepancy, please email 411@iplantcollaborative.org
3. Please check your email, and this wiki prior to the workshop, as this is the way we will communicate any important changes.
Workshop Notes
Here are a few important links that you may wish to refer to during and after the workshop:
Account/Password Problems http://user.iplantcollaborative.org
iPlant Help and Discussion Forums
General iPlant Support Issues
iPlant Privacy (And other) policies - "Your Data is Your Data"
- www.iplantcollaborative.org/privacy
- www.iplantcollaborative.org/about/data-set-hosting
- www.iplantcollaborative.org/about/general-usage-policy
Goal
The goal of this workshop is to demonstrate some of the ways that iPlant Cyberinfrastructure can advance your scientific objectives.
As you navigate the through demonstrations and hands-on activities presented at the workshop, you will gain a sense of how to consume
and customize iPlant tools and services for your investigations.
Agenda
Recording of Webinar - AM Session - PM Session
Friday, October 12
Time |
Presentation |
Slides |
Links |
---|---|---|---|
09:00 AM |
Introductions |
|
|
09:20 AM |
An Overview of the iPlant Collaborative |
||
09:40 AM |
Overview of the iPlant Discovery Environment (DE) |
||
10:15 AM |
iPlant Data Store - Managing "Big Data" |
||
10:45 AM |
Break |
|
|
11:00 AM |
Building and Using Workflows Within the DE; Phylogenetics |
|
|
11:30 AM |
Extending the DE for Your Research: Tool Integration and Customization |
|
|
12:15 PM |
Lunch (off-line) |
|
|
1:15 PM |
Atmosphere - Custom Cloud Computing |
||
1:45 PM |
Beginning QIIME with Atmosphere |
|
|
2:15 PM |
Open Topics; Transferring Data to/within iPlant |
|
|
Webex Call-In Information
Topic: LBNL Webinar AM
Date: Friday, October 12, 2012
Time: 8:00 am, Pacific Daylight Time (San Francisco, GMT-07:00)
Meeting Number: 627 488 989
Meeting Password: iPC123
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To join the online meeting (Now from mobile devices!)
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1. Go to https://iplant.webex.com/iplant/j.php?ED=213625507&UID=0&PW=NYTc3Y2M3NzQ4&RT=MiM0
2. If requested, enter your name and email address.
3. If a password is required, enter the meeting password: iPC123
4. Click "Join".
To view in other time zones or languages, please click the link: https://iplant.webex.com/iplant/j.php?ED=213625507&UID=0&PW=NYTc3Y2M3NzQ4&ORT=MiM0
-------------------------------------------------------
To join the audio conference only
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To receive a call back, provide your phone number when you join the meeting, or call the number below and enter the access code.
Call-in toll-free number (US/Canada): 1-877-668-4493
Call-in toll number (US/Canada): 1-650-479-3208
Global call-in numbers: https://iplant.webex.com/iplant/globalcallin.php?serviceType=MC&ED=213625507&tollFree=1
Toll-free dialing restrictions: http://www.webex.com/pdf/tollfree_restrictions.pdf
Access code:627 488 989
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For assistance
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1. Go to https://iplant.webex.com/iplant/mc
2. On the left navigation bar, click "Support".
Topic: LBNL Webinar PM
Date: Friday, October 12, 2012
Time: 1:15 pm, Pacific Daylight Time (San Francisco, GMT-07:00)
Meeting Number: 620 590 942
Meeting Password: iPC123
-------------------------------------------------------
To join the online meeting (Now from mobile devices!)
-------------------------------------------------------
1. Go to https://iplant.webex.com/iplant/j.php?ED=213625947&UID=0&PW=NNTc1NzBjZTI3&RT=MiM0
2. If requested, enter your name and email address.
3. If a password is required, enter the meeting password: iPC123
4. Click "Join".
To view in other time zones or languages, please click the link: https://iplant.webex.com/iplant/j.php?ED=213625947&UID=0&PW=NNTc1NzBjZTI3&ORT=MiM0
-------------------------------------------------------
To join the audio conference only
-------------------------------------------------------
To receive a call back, provide your phone number when you join the meeting, or call the number below and enter the access code.
Call-in toll-free number (US/Canada): 1-877-668-4493
Call-in toll number (US/Canada): 1-650-479-3208
Global call-in numbers: https://iplant.webex.com/iplant/globalcallin.php?serviceType=MC&ED=213625947&tollFree=1
Toll-free dialing restrictions: http://www.webex.com/pdf/tollfree_restrictions.pdf
Access code:620 590 942
Attendee List
Name |
Affiliation |
User Acct |
|
---|---|---|---|
Ping Hu |
"PHu@lbl.gov" <PHu@lbl.gov>, |
LBNL |
X |
Jakk Wong |
"jakkwong@lbl.gov" <jakkwong@lbl.gov>, |
LBNL |
X |
Lauren Tom |
"ltom@lbl.gov" <ltom@lbl.gov>, |
LBNL |
X |
E. Dubinsky |
"eadubinsky@lbl.gov" <eadubinsky@lbl.gov>, |
LBNL |
needs acct |
Nina Kamennaya |
"nkamennaya@lbl.gov" <nkamennaya@lbl.gov>, |
LBNL |
X |
U. Rocha |
"urocha@lbl.gov" <urocha@lbl.gov>, |
LBNL |
needs acct |
Hsiao chien |
"hclim@lbl.gov" <hclim@lbl.gov>, |
LBNL |
X |
N. Tas |
"ntas@lbl.gov" <ntas@lbl.gov>, |
LBNL |
needs acct |
Giancarlo Galindo |
"GGalindo@lbl.gov" <GGalindo@lbl.gov>, |
LBNL |
X |
E. Prestat |
"EPrestat@lbl.gov" <EPrestat@lbl.gov>, |
LBNL |
need acct |
Yvette Piceno |
"ympiceno@lbl.gov" <ympiceno@lbl.gov>, |
LBNL |
X |
Jason Williams |
"Williams, Jason" <williams@cshl.edu>, |
iPlant |
X |
Sheldon McKay |
"McKay, Sheldon" <mckays@cshl.edu |
iPlant |
X |
Survey
iPlant is by, for, and of the community. It is important for us to hear from you about what works and what doesn't. We'd also like to know about computational bottlenecks in your investigations that iPlant should target for developing community-scale solutions. We want to know how you found out about the workshop, and what you would like to see iPlant do to further assist you in using iPlant CI in your research. Therefore, we ask you to please answer the survey:
https://www.surveymonkey.com/s/webinard2