2012 10 12 TSWeb Berkeley Labs

Organizers

Jason Williams, Yvette Piceno

Local Point of Contact

Yvette Piceno

Trainers

Jason Williams, Sheldon McKay

Date

October 12, 2012

Location

webinar

Flyer


Page Contents

Pre-Workshop Homework

1. Please try out your iPlant credentials to ensure you have access. You can Log-in from user.iplantcollaborative.org, click the button "iPlant Login"

  • Once authenticated click the "My Services" link
  • Under "My Services" please ensure you have access to: Atmosphere, Discovery Environment, iPlant Data Store. You can also request access to other services here
  • If you have account problems, please email support@iplantcollaborative.org

2. Please be sure that your name is listed in the Attendee List (below) for the workshop section(s) you were accepted to. If there is a discrepancy, please email 411@iplantcollaborative.org

3. Please check your email, and this wiki prior to the workshop, as this is the way we will communicate any important changes.

Workshop Notes

Here are a few important links that you may wish to refer to during and after the workshop:

Account/Password Problems http://user.iplantcollaborative.org

iPlant Help and Discussion Forums

General iPlant Support Issues

iPlant Privacy (And other) policies - "Your Data is Your Data"

Goal

The goal of this workshop is to demonstrate some of the ways that iPlant Cyberinfrastructure can advance your scientific objectives.
As you navigate the through demonstrations and hands-on activities presented at the workshop, you will gain a sense of how to consume
and customize iPlant tools and services for your investigations.

Agenda

Recording of Webinar - AM Session - PM Session

Handout

Friday, October 12

Time

Presentation

Slides

Links

09:00 AM

Introductions

 

 

09:20 AM

An Overview of the iPlant Collaborative

iPlant intro-1.pptx

Getting Started w/iPlant Guide, iPlant Overview Video,

09:40 AM

Overview of the iPlant Discovery Environment (DE)

DE Overview.pptx

DE Manual, DE Overview Video,

10:15 AM  

iPlant Data Store - Managing "Big Data"

Data Store Overview.pptx

Data Store Guide, Data Store Overview Video

10:45 AM

Break

 

Data Store URLS

11:00 AM

Building and Using Workflows Within the DE; Phylogenetics

 

Creating an automated workflow

11:30 AM 

Extending the DE for Your Research: Tool Integration and Customization

 

 

12:15 PM

Lunch (off-line)

 

 

1:15 PM

Atmosphere - Custom Cloud Computing

Atmosphere Overview.pptx

Atmosphere Manual, Atmosphere Video

1:45 PM

Beginning QIIME with Atmosphere

 

Beginning QIIME

2:15 PM

Open Topics; Transferring Data to/within iPlant

 


Webex Call-In Information

Topic: LBNL Webinar AM
Date: Friday, October 12, 2012
Time: 8:00 am, Pacific Daylight Time (San Francisco, GMT-07:00)
Meeting Number: 627 488 989
Meeting Password: iPC123

-------------------------------------------------------
To join the online meeting (Now from mobile devices!)
-------------------------------------------------------
1. Go to https://iplant.webex.com/iplant/j.php?ED=213625507&UID=0&PW=NYTc3Y2M3NzQ4&RT=MiM0
2. If requested, enter your name and email address.
3. If a password is required, enter the meeting password: iPC123
4. Click "Join".

To view in other time zones or languages, please click the link: https://iplant.webex.com/iplant/j.php?ED=213625507&UID=0&PW=NYTc3Y2M3NzQ4&ORT=MiM0

-------------------------------------------------------
To join the audio conference only
-------------------------------------------------------
To receive a call back, provide your phone number when you join the meeting, or call the number below and enter the access code.
Call-in toll-free number (US/Canada): 1-877-668-4493
Call-in toll number (US/Canada): 1-650-479-3208
Global call-in numbers: https://iplant.webex.com/iplant/globalcallin.php?serviceType=MC&ED=213625507&tollFree=1
Toll-free dialing restrictions: http://www.webex.com/pdf/tollfree_restrictions.pdf

Access code:627 488 989

-------------------------------------------------------
For assistance
-------------------------------------------------------
1. Go to https://iplant.webex.com/iplant/mc
2. On the left navigation bar, click "Support".

http://www.webex.com

Topic: LBNL Webinar PM
Date: Friday, October 12, 2012
Time: 1:15 pm, Pacific Daylight Time (San Francisco, GMT-07:00)
Meeting Number: 620 590 942
Meeting Password: iPC123

-------------------------------------------------------
To join the online meeting (Now from mobile devices!)
-------------------------------------------------------
1. Go to https://iplant.webex.com/iplant/j.php?ED=213625947&UID=0&PW=NNTc1NzBjZTI3&RT=MiM0
2. If requested, enter your name and email address.
3. If a password is required, enter the meeting password: iPC123
4. Click "Join".

To view in other time zones or languages, please click the link: https://iplant.webex.com/iplant/j.php?ED=213625947&UID=0&PW=NNTc1NzBjZTI3&ORT=MiM0

-------------------------------------------------------
To join the audio conference only
-------------------------------------------------------
To receive a call back, provide your phone number when you join the meeting, or call the number below and enter the access code.
Call-in toll-free number (US/Canada): 1-877-668-4493
Call-in toll number (US/Canada): 1-650-479-3208
Global call-in numbers: https://iplant.webex.com/iplant/globalcallin.php?serviceType=MC&ED=213625947&tollFree=1
Toll-free dialing restrictions: http://www.webex.com/pdf/tollfree_restrictions.pdf

Access code:620 590 942

Attendee List

Name

Email

Affiliation

User Acct

Ping Hu

"PHu@lbl.gov" <PHu@lbl.gov>,

LBNL

X

Jakk Wong

"jakkwong@lbl.gov" <jakkwong@lbl.gov>,

LBNL

X

Lauren Tom

"ltom@lbl.gov" <ltom@lbl.gov>,

LBNL

X

E. Dubinsky

"eadubinsky@lbl.gov" <eadubinsky@lbl.gov>,

LBNL

needs acct

Nina Kamennaya

"nkamennaya@lbl.gov" <nkamennaya@lbl.gov>,

LBNL

X

U. Rocha

"urocha@lbl.gov" <urocha@lbl.gov>,

LBNL

needs acct

Hsiao chien

"hclim@lbl.gov" <hclim@lbl.gov>,

LBNL

X

N. Tas

"ntas@lbl.gov" <ntas@lbl.gov>,

LBNL

needs acct

Giancarlo Galindo

"GGalindo@lbl.gov" <GGalindo@lbl.gov>,

LBNL

X

E. Prestat

"EPrestat@lbl.gov" <EPrestat@lbl.gov>,

LBNL

need acct

Yvette Piceno

"ympiceno@lbl.gov" <ympiceno@lbl.gov>,

LBNL

X

Jason Williams

"Williams, Jason" <williams@cshl.edu>,

iPlant

X

Sheldon McKay

"McKay, Sheldon" <mckays@cshl.edu

iPlant

X

Survey

iPlant is by, for, and of the community. It is important for us to hear from you about what works and what doesn't. We'd also like to know about computational bottlenecks in your investigations that iPlant should target for developing community-scale solutions. We want to know how you found out about the workshop, and what you would like to see iPlant do to further assist you in using iPlant CI in your research. Therefore, we ask you to please answer the survey:

https://www.surveymonkey.com/s/webinard2

Internal Planning