2014 02 18 PCO-BCO Meeting

Tues, Feb 18 - Thurs, Feb 20, 2014

T/W: 8 AM - 5 PM; Th 8 AM - 4 PM

University of Arizona, Thomas Keating Bioresearch Building (in E3 on campus map, Rms 433 on Tu/Thur, Keating 103 on Wed; 409 reserved for break-outs on Tuesday plus on Thursday afternoon; Rm 431 will be used for break-outs on Thursday morning)

Aloft, 1900 E Speedway Blvd, Tucson AZ 85719
tel: 520.908.6800

R. Walls, iPlant

Ramona Walls

x

x

x

n/a

n/a

Rob Guralnick

x

x

Feb 17 UA 6505 @ 8:58PM

Feb 20 UA 6485 @ 6:10PM

John Deck

x

x

x

Feb 17 UA 6352 @ 9:10PM

Feb 23 UA 6341 @ 3:38PM

Suzi Lewis

x

x

x

From Phoenix

Peter Mitford

x

x

x

Arriving early

Departing late

Jim Hu

x

x

x

Feb 17 AA 1401 @ 9:10PM

Feb 23 AA1404 @ 4:00PM

Jie Zheng

x

x

Feb 17 AA1401 @ 9:10 PM

Feb 20 USAirways 2828 @ 8:06 PM

Neil Davies

x

x

Feb 17 UA 6352 @ 9:10 PM

Feb 20 UA 6341 @ 3:01 PM

Pier Buttigieg

x

x

x

Philippe Rocca-Serra

x

x

Feb 17 AA 155 @ 7:10PM

Feb 23 AA 1404 4:00PM

Norman Morrison

x

x

Feb 18 AA 354 @ 10:20 PM

Feb 23 AA 1404 4:00PM

Michael Denslow

x

Feb 18 UA 6485 @ 5:35 PM

Feb 20 UA 6485 @ 6:10 PM

Jacob Parnell

x

Feb 18 UA 6485 @ 5:35 PM

Feb 20 UA 6485 @ 6:10PM

John Wieczorek

x

Feb 18 AA 2598 @ 5:10 PM

Feb 21 AA 2596 @ 7:15 AM

Bob Robbins

x

x

Feb 18 UA 6352 @ 9:10 PM

Feb 23  UA 6491 @ 6:40 PM

Melissa Haendel

x

via Webex

n/a

Matthew Brush

x

via Webex

n/a

Pelin Yilmaz

x

via Webex

n/a

David Osumi Sutherland

x

via Webex

n/a

Rachel Gallery

x

n/a

n/a

Bonnie Hurwitz

x

n/a

n/a

Adam Buntzman

x

n/a

n/a

8:45-9:00am

Arrive at iPlant to be escorted to 4th Fl

Bio5 Lobby

9am-9:30

Welcome to iPlant and to the PCO/BCO meeting. Introduction to meeting goals

Room 433, Bio5 Building

9:30-10:00am

Introduction to PCO. Big picture overview of the intent of PCO. Term walk-through (Ramona).

Webex

10:00-10:45

Discussion of PCO use cases. Develop two novel use cases. (All)

Webex

10:45-11:00

Coffee Break

11:00-12:15

Break out into two groups. Each group has an identical charge: Use PCO to show how priority use case developed above can be met. If not, what new terms are needed? Draft definitions of proposed new terms.

Webex

12:15-12:40

Plenary discussion

12:40-1:45

Lunch ordered in from Baggins

Patio

1:45-2:00

Discuss next use case to tackle

2:00-3:15

Break out into two groups. Each group has an identical charge: Use PCO to show how 2nd use case can be met. If not, what new terms are needed? Draft definitions of proposed new terms.

3:15-3:30

Short plenary discussion

3:30-3:45

Coffee break

3:45-4:00

Discussion of overall issues with population-level phenotypes.

Webex

4:00-5:30

Break-out session 3. Form two break-out groups. Each group has an identical charge: How to describe population-level phenotypes and how to represent that in the PCO?

Webex

5:30-5:50

Short plenary discussion/ten minute presentations from groups on outcomes.

5:50-6:00

Compile presentation into a single short presentation for RCN meeting. Discuss next steps, plans for dinner, etc.

6 PM

Dinner: Pizza and beer at 1702

8:30-9:00

Assemble

Room 103, Bio5 Building. Accessible from lobby of Bio5 Building

9:00-9:15

Quick overview of Day 2 Goals and introduction of new participants

9:15-9:45

PCO wrap-up discussion.
Summarize work completed.
Next steps.
Discuss new opportunities, assign left over work to be completed.
Figure out how to continue forward progress.

9:45-10:15

BCO kick-off - Meeting goals, big picture. What outcomes will indicate success of this meeting (both technical and tangible products).

10:15-10:30am

Coffee break

10:30-11:15

Introduction to BCO - Value of the ontology.
Current status.
Example use cases from barcoding/metagenomics

11:15-11:45

Tools-Up! Brief intro. to Protege, ISAtools, BiocodeFIMS.
Feedback from data providers on what tools and implementations they would like to see developed.

11:45-1:00pm

Break-out sessions: Group 1: Data provider skills up: Value of BCO. BFO framework (Ramona open session with data providers + Pier or Jie?)
Group 2: BCO step 1: DwC/MiXS <-> BCO harmonization phase 1 (Tuco) Assigning domains to DwC properties OR things that would be better represented by a BCO class.

1:00-1:45pm

Lunch on-site from Boca

1:45-2:15pm

Plenary session discussion 1. This is the output from Group 2 above. Walk through the BCO Sample Spreadsheet, in particular how data on the spreadsheet relates BCO and DwC/MIxS Terms.

2:15-3:30pm

Plenary cont.: Example markup of spreadsheets (Ramona & John D)
Example 1: BOLD sample spreadsheet with markup
Example 2: Metagenomics sample spreadsheet with markup

3:30 - 3:45

Coffee Break

3:45-5:30

Break-out sessions. Arts and Crafts time. Two groups, mixed with ontology developers and data generators.
Take use case spreadsheets from data providers and walk through annotation exercise to bring in line with BCO.

5:30-5:45

Short plenary discussion

5:45-6:00

Wrap up and dinner plans

6 PM

Dinner

Wilko, about 20 minute walk from hotel

8:45-9:00

Assemble

Bio5 lobby

9:00-9:15

Quick overview of Day 2 Goals

Bio5 Rm 433

9:15-11:00

Continued break-outs from Day 2

11:00-11:15

Coffee Break

11:15-12:00

Plenary discussion. 15 minutes presentations on outputs from breakout groups.

12:00 - 12:30

Plenary discussion: Next steps BCO for data providers. Work assignments, future meeting plans.

12:30-1:30

Lunch on site from Zayna Mediterranean

Patio

1:30-3:00

Plenary discussion: Term management BCO.Coordination between ontologies BCO/PCO/OBI/ENVO/GO/NBO with possible break outs.
Any additional Harmonizing DwC and MiXS with BCO.

3:00-3:15

Coffee Break

3:15-4:00pm

Next steps for BCO curators.
Work assignments, future meeting plans. Compile meeting documents into a single place including photos & notes.

4:00 PM

Adjourn

4:30 PM

Those who are attending Phenotype RCN depart for Biosphere 2