2012 07 25 TSW USDA-ALARC
Organizers: |
Eric Lyons, Uwe Hilgert, 411 |
|---|---|
Local Point of Contact: |
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Trainers: |
Eric Lyons, Andrew Lenards, Sheldon McKay, Roger Barthelson, Uwe Hilgert, Martha Narro,Matt Bomhoff (CoGe) |
Date: |
July 25-26, 2012 |
Location: |
U. S. Arid-Land Agricultural Research Center (ALARC)(Directions here) |
Online Registration: |
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Advertising: |
USDA-2012-Maricopa iPlantWorkshop.pdf(Current) Flyer (pre) |
Goal
To provide an interactive, hands-on training of iPlant Tools and Services so that participants can begin to use iPlant cyberinfrastructure in their plant science research.
Pre-Workshop Homework
1. Please test your iPlant credentials to ensure you have access. You can log-in from user.iplantcollaborative.org, click the button "iPlant Login"
- Once authenticated, click the "My Services" link
- Under "My Services" please ensure you have access to: Atmosphere, Discovery Environment, iPlant Data Store. You can also request access to other services here
- If you have account problems, please email support@iplantcollaborative.org
2. Please check your email and this wiki prior to the workshop, as this is the way we will communicate any important changes.
3. Please check this software requirement list and install the necessary software: Software Requirements
- Please contact your system administrator if you do not have permission to install software on your computer.
Agenda
Day 1 (July 25): Introducation to iPlant and Cyberinfrastructure for Science
Time |
Topic |
Links |
Trainer |
|---|---|---|---|
10:00 AM - 11:00 AM |
iPlant Overview |
|
Eric Lyons |
11:00 am - 12:30 pm |
Discovery Environment |
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|
12:30 pm - 1:30 pm |
Break/Lunch - go out |
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All |
1:30 pm - 3:00 pm |
Data Store |
|
Eric |
3:00 pm - 4:00 pm |
Atmosphere Cloud Computing |
|
|
4:00 pm - 5:00 pm |
Open Session |
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All |
Day 2 (July 26): Science-specific Workshops
Time |
Topic |
Links |
Trainer |
|---|---|---|---|
9 am - 12 pm |
RNA-Seq in the Discovery Environment and Atmosphere |
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12 am - 1 pm |
Break/Lunch - go out |
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All |
1 pm - 2 pm |
Phylogenetics in the Discovery Environment |
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2 pm - 2:15 pm |
Break |
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All |
2:15 pm - 4:15 pm |
Comparative Genomics with CoGe |
|
Eric |
Attendee List (25 max)
Name |
Research Area |
|
|
|---|---|---|---|
Shelbi Atherton NOT THERE |
shelbi.atherton@gmail.com |
Genetics and Nucleic Acids |
needs Atmo |
Tim Dabbert |
tadabb@email.arizona.edu |
Plant Biology |
needs Atmo |
John Dyer CANCELLED |
john.dyer@ars.usda.gov |
Molecular Biosciences |
needs Atmo |
Jeff Fabrick |
jeff.fabrick@ars.usda.gov |
Biochem and Mol Structure/Function |
needs Atmo |
Spencer Fosnot |
spencer.fosnot@ars.usda.gov |
Molecular Biosciences |
needs Atmo |
Andrew French |
andrew.french@ars.usda.gov |
Remote Sensing |
needs Atmo |
Michael Gore |
Michael.Gore@ars.usda.gov |
Genetics and Nucleic Acids |
needs Atmo |
Joe Hull |
joe.hull@ars.usda.gov |
Biochem and Mol Structure/Function |
needs Atmo |
Dylan Jacobs CANCELLED |
dylan.jacobs@ars.usda.gov |
Genetics and Nucleic Acids |
needs Atmo |
Matt Jenks |
matt.jenks@ars.usda.gov |
|
|
Bruce Kimball |
bruce.kimball@ars.usda.gov |
Biological and Critical Systems |
needs Atmo |
Greg Lohrey |
glohrey@purdue.edu |
Plant Biology |
needs Atmo |
Jon Millhollon |
jon.millhollon@gmail.com |
Molecular Biosciences |
needs Atmo |
Brian Nadon |
brian.nadon@ars.usda.gov |
Genetics and Nucleic Acids |
needs Atmo |
Judy Nguyen |
jtnguyen.jn@gmail.com |
Plant Genetics |
no acct |
Mana Ohkura |
manabanana@email.arizona.edu |
Molecular Biosciences |
needs Atmo |
Sunjung Park |
sunjung.park@ars.usda.gov |
Plant Biology |
needs Atmo |
Mike Roybal |
mike.roybal@ars.usda.gov |
Communications and Computational Systems |
needs Atmo |
Bob Strand |
bob.strand@ars.usda.gov |
|
|
Dylan Thomas |
official.dylan.thomas@hotmail.com |
Genetics and Nucleic Acides |
needs Atmo |
Kelly Thorp |
kelly.thorp@ars.usda.gov |
Adv Scientific Computation |
needs Atmo |
Gary Wall |
gary.wall@ars.usda.gov |
Global Atmospheric Research |
needs Atmo |
Hongliang Wang |
hongliang.wang@ars.usda.gov |
Plant Biology |
needs Atmo |
Josh Weaver |
jweaver2011@email.arizona.edu |
Plant Sciences |
needs Atmo |
Jeff White |
jeffrey.white@ars.usda.gov |
Climate Change and Ag |
needs Atmo |