2018 07 14 MaizeCODE annotation Workshop at Plant Biology 2018

Date and Time	Saturday, July 14th (9:00am-12:00pm)
Organizers:	Cristina Fernandez-Marco (MaizeCODE) Liya Wang (Cyverse and MaizeCODE)
Local Point of Contact:	Cristina Fernandez-Marco
Location	ASPB - Montreal

Workshop Prep

1. Laptop

Please bring your own Wi-Fi enabled laptop to the workshop. Make sure your laptop has the following:

Internet Browser: Please have an up-to-date web browser (We strongly recommend Firefox, Safari, or Chrome and others have significant issues.)

2. CyVerse Account (OPTIONAL)

Get your free account at http://user.cyverse.org/. Please register with an institutional email account.

2. Atmosphere Access (OPTIONAL)

Go to http://user.cyverse.org/. In the Services Menu under ‘MY SERVICES’ you should see Atmosphere listed as an option you can launch. If not, look under the Available menu, and click the ‘REQUEST ACCESS’ link. You will receive an email requesting additional information. To qualify for an Atmosphere account, your CyVerse account must be associated with an institutional email address (e.g. .edu/.org/.gov).

Time	Topic/Activity	Presenter	Guides	Notes/Links
9:00 - 9:15 AM	Welcome and introductions	All
9:15 - 9:45 AM	Introduction to MAKER annotation pipeline and CyVerse	Liya	slides, tutorial	CyVerse Homepage CyVerse Learning Center
9:45 - 10:00 AM	Introduction to MaizeCODE	Cris		MaizeCode Homepage
10:00 - 10:30 AM	Introduction to Apollo	Cris		Apollo Homepage
10:30 - 10:35 AM	Break
10:35 - 11:35 AM	Gene families / Independent projects / Questions	All		http://data.maizecode.org/apollo/annotator/
11:35 - 11:55 AM	Results / Challenges	All
11:55 - 12:00 PM	Wrap up / Involvement / Feedback	All

Cold Spring Harbor Laboratory

MaizeCode

Cold Spring Harbor Laboratory

CyVerse, MaizeCODE