iPlant at TDWG 2015
Short link to this page: http://bit.ly/1euy02s
Please register for an iPlant account if you want to follow along with hands on activities.
After creating your iPlant account, you must request access to Bisque and Atmosphere separately.
Agenda, Session 1
Monday, 28 Sep. 2015, 16:00-17:30, Flamingo Tent
iPlant Overview
15 minute presentation of the main features of iPlant.
Working with the iPlant Data Store
Overview: Main features of the Data Store
Hans-on activities:
Uploading, downloading, and sharing data via the Discovery Environment.
A you can use for upload.
Uploading data using Cyberduck. Please install before workshop.
example ftp site: ftp://ftp.ensemblgenomes.org/pub/plants/release-28/
Using iCommands (pending time and interest). Please install before workshop.
Agenda, Session 2
Tuesday, 28 Sep. 2015, 09:00-10:30, Flamingo tent
Overview: Data Analysis using iPlant Cyberinfrastructure
Discovery Environment (DE), Atmosphere, Bisque, Agave API
Hands-on activities:
Sequence alignment using the DE
Bisque:
upload, sharing
adding metadata
seed count analysis
Step-by-step
Links
Getting started wiki page: Links to the basic resources you need to get started with iPlant.
iPlant Learning Center: Tutorials, announcements of live or virtual workshops
DE quick start tutorial
Cyberduck: graphical interface for desktop transfers
iCommands: Command line data management. How to install and common commands.
Ask: iPlant forum