2013 10 03 TSW NYBG
Organizers |
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Trainers |
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Date |
Thursday, Oct 3, 2013 |
Location |
Pfizer Plant Research Laboratory - Conference Room |
Please Remember to Bring
- Wi-Fi enabled laptop and power supply:
- Please have JAVA installed and enabled (help)
- Please have an up-to-date web browser (Recommended Firefox or Safari )
Directions and Parking
For offsite participants:
Enter Mosholu Gate, which is directly opposite the Botanical Garden Metro-North station on Southern Blvd. This is NOT the main entrance, which is also on Southern Blvd but is opposite the main entrance to Fordham University. The Mosholu Gate is just a bit farther north along Southern Blvd. (which in some places may still be labelled Kazimiroff Blvd)
Turn left, park, and the lab is directly ahead of them, straight down the road. It says "Pfizer Plant Research Laboratory". The door to the lab building will be open. The conference room is on the first floor, to the left as you enter the atrium.
For further travel info see the Garden's direction page
http://www.nybg.org/visit/directions.php
Map page:
www.nybg.org/map/
or email Amy Litt.
Workshop Notes
Here are a few important links that you may wish to refer to during and after the workshop:
Account/Password Problems
iPlant Help and Discussion Forums
General iPlant Support Issues
iPlant Privacy (And other) policies - "Your Data is Your Data"
- www.iplantcollaborative.org/privacy
- www.iplantcollaborative.org/about/data-set-hosting
- www.iplantcollaborative.org/about/general-usage-policy
Workshop Handout
Workshop Program
Time |
Description |
Slides |
Links |
Presenter |
9:00 AM |
Arrive / Sign-in / Verify iPlant Accounts |
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9:15 AM |
Welcome - Presenter/Participant Self-Introductions |
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All |
9:30 AM |
Overview of the iPlant Collaborative |
Jason |
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09:45 AM |
Jason |
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10:15 AM |
Jason |
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10:45 AM |
Coffee Break |
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11:00 AM |
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Sheldon |
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12:00 PM |
Lunch |
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1:00 PM |
Building Workflows |
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Sheldon |
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1:45 PM |
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Sheldon |
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2:30 PM |
Genome assembly and annotation SOAP and MAKER |
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Jason |
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3:00 PM |
Stretch Break |
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3:15 PM |
Biological Image Analysis with PhtyoBisque |
Ramona |
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3:45 PM |
Workshop summary and conclusion |
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Jason |
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4:00 PM |
Individual consultations |
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All |
Attendee List (max: 20)
Name |
Research Area |
Acct Status |
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Amy Litt |
Plant Biol |
alitt@nybg.org |
X |
Maya Strahl |
Mol Biosciences |
mstrahl@nybg.org |
X |
Xian Wang |
Systematic & Pop Biol |
xwang@nybg.org |
X |
Fabian Michelangeli |
Systematic & Pop Biol |
fabian@nybg.org |
X |
Annie Virnig |
Plant Biol |
avirnig@nybg.org |
X |
Barbara Ambrose |
Dev Biol |
bambrose@nybg.org |
X |
Alejandra Vasco |
Dev Biol |
avasco@nybg.org |
X |
CANCELLED Rachel Meyer |
Plant Biol |
rm181@nyu.edu |
X |
Jessica Allen |
Eco Studies |
jallen@nybg.org |
X |
Anne Plessis |
Plant Biol |
ap133@nyu.edu |
X |
Fernanda Santos-Silva |
Plant Biol |
fssbiolgia@gmail.com |
X |
Karen Hicks |
Plant Biol |
hicksk@kenyon.edu |
X |
Stephen Gottschalk |
IT and Orgs |
sgottschalk@nybg.org |
X |
Elizabeth Tineo |
Spec Projects |
etineo@nybg.org |
X |
Jenna Dorey |
Plant Biol |
adekka11@gmail.com |
X |
Paola Pedraza |
Systematic & Pop Biol |
ppdedraza@nybg.org |
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Elizabeth McCarthy |
Plant Biol |
emccarthy@nybg.org |
X |
Jingjing Tong |
Mol Biosciences |
tongjingjingapp@gmail.com |
X |
Xiaoling Yao |
Plant Biol |
yao20092010@hotmail.com |
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Julian Aguirre-Santoro |
Systematic & Pop Biol |
jagguirre@nybg.org |
X |
Beatriz Perez-Sweeney |
Genetics & Nucleic Acides |
bperezsweeney@fordham.edu |
X |
WAITLIST |
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Yi-Hsuan Chu |
Genetics & Nucleic Acids |
chushania@gmail.com |
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Eudald Illa |
Plant Genetics |
illaberenguer.1@osu.edu |
X |
Who Should Attend?
Any investigator (PIs, post-docs, grad students, industry users) who is or will be working with large datasets and computation-intensive research questions in the life-sciences (plants and animals!). Space is limited; register at:
What Should I Bring?
This workshop is hands-on so please bring a Wi-fi enabled laptop. Lunch and breaks will be provided.