2014 01 31 TSW Linfield College
Organizers | Jason Williams, Sam Fox |
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Trainers | Jason W., Ann S., John F. |
Date | Friday and Saturday, Jan 31-Feb 1, 2014 |
Location | Nicholson Library - BLDG 58a |
Please Remember to Bring
Wi-Fi enabled laptop and power supply:
Workshop Notes
Here are a few important links that you may wish to refer to during and after the workshop:
Account/Password Problems
iPlant Help and Discussion Forums
General iPlant Support Issues
iPlant Privacy (And other) policies - "Your Data is Your Data"
Workshop Program (Friday, Jan 31st)
Time | Description | Slides | Links | Presenter |
09:00 AM | Arrive / Sign-in / Verify iPlant Accounts |
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09:30 AM | Welcome - Presenter/Participant Self-Introductions |
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09:45 AM | Overview of the iPlant Collaborative | | Jason | |
10:00 AM | Overview of the iPlant Discovery Environment (DE) | | Jason | |
10:45 AM | Coffee Break |
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11:00 AM | iPlant Data Store - Managing "Big Data" | | John | |
11:30 AM | Workflows in the DE; Phylogenetics Example | | Ann | |
12:10 PM | Lunch |
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01:00 PM | Using the DE for RNA-Seq | | Jason | |
02:00 PM | Atmosphere Cloud Computing | | Ann | |
03:00 PM | Coffee Break |
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03:15 PM | Tools Integration in the DE | |
| John |
03:45 PM | Educational Genome Annotation in DNA Subway | |
| Jason |
04:15 PM | Workshop summary and conclusion | Jason |
Workshop Program (Saturday, Feb 1st)
Time | Description | Slides | Links | Presenter |
|---|---|---|---|---|
09:30 AM | Overview and demo of iPlant GWAS | Ann | ||
10:30 AM | Coffee Break | |
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10:45 AM | Getting started with Annotation: MAKER | Jason | ||
11:15 AM | Visualization of RNA-Seq results in Atmosphere | | Jason | |
12:00 PM | Lunch (On your own) |
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01:00 PM | Graduate Student Seminar: |
| John | |
01:45 PM | iCommands and other Data Store applications: |
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| Jason |
02:00 PM | Educational DNA Barcoding | Slides | Jason | |
02:30 PM | Individual Consultations |
| All |
Attendee List (max: 30)
First | Last | Email | Institution |
|---|---|---|---|
Katie | Clark | katie.clark@pacificu.edu | Pacific University |
Estefania | Elorriaga | estefania.elorriaga@oregonstate.edu | Oregon State University |
Justin | Elser | elserj@science.oregonstate.edu | Oregon State University |
Elahe | Esfandiari | elahe.esfandiari@gmail.com | Oregon State University |
Sydney | Everhart | everhars@onid.orst.edu | Oregon State University |
Sam | Fox | sfox@linfield.edu | Linfield College |
Christopher | Gaiser | cgaiser@linfield.edu | Linfield College |
Matthew | Geniza | genizam@onid.orst.edu | Oregon State University |
Zhian | Kamvar | kamvarz@onid.orst.edu | Oregon State University |
Amy | Klocko | Amy.Klocko@oregonstate.edu | Oregon State University |
Anne | Kruchten | akrucht@linfield.edu | Linfield College |
Haiwei | Lu | hlu602031@gmail.com | Oregon State University |
Kyle | MacLea | kmaclea@linfield.edu | Linfield College |
GIRIJESH KUMAR | PATEL | patelgirijesh@gmail.com | Hermiston Agricultural Research & Extension Center |
Justin | Preece | preecej@science.oregonstate.edu | Oregon State University |
Catherine | Reinke | creinke@linfield.edu | Linfield College |
Steven | Roberts | sr320@uw.edu | University of Washington |
Stephanie | Rosales | srosales712@gmail.com | OSU |
Jon | Schnorr |