2014 03 14 iPlant Mini-Workshop 2014 Maize Meeting

2014 03 14 iPlant Mini-Workshop 2014 Maize Meeting

Organizers

Jason Williams

Trainers

Jason W

Date

Friday Mar 14, 2014

Location

Conference Room 308 4:00-6:30 (16:00-18:30)

Workshop Checklist ?????

1. Wi-Fi enabled CHARGED laptop and power supply:

  • The conference room has limited charging/power - so please charge your laptop ahead of time ?????,??????
  • Please have JAVA installed and enabled (help)
  • Please have an up-to-date web browser (Recommended Firefox or Safari ) (?????????????????????JAVA)

2. iPlant Account (????????????)

3. Download VNC Viewer (?? VNC Viewer)

Workshop Links ???????

Here are a few important links that you may wish to refer to during and after the workshop:

Account/Password Problems

iPlant Help and Discussion Forums

General iPlant Support Issues

iPlant Privacy (and other) policies - "Your Data is Your Data"

Workshop Program (Friday, Mar 14) ? ????

Time

Activity

Slides

Handout/Instructions

Links/Resources

16:00

Welcome, overview of iPlant

PPT

 

 

16:20

Conducting and analysis in the Discovery Environment

PPT

PDF

YouTube

16:40

Managing Data with iPlant

PPT

PDF

YouTube

17:00

Cloud Computing with Atmosphere

PPT

PDF

YouTube

17:20

Choose an activity

 

 

 

17:20

A) Starting RNA-Seq using Tuxedo Workflow

PPT

Learning Center

 


B) Starting GWAS with GBS

 

Learning Center

 


C) Explore on your own

 

 

 

17:50

Education - DNA Subway - Green Line and Maize Annotation for Undergrads

PPT

 

DNA Subway

18:00

Wrap up and where to get help

 

 

iPlant User Forum