2014 03 14 iPlant Mini-Workshop 2014 Maize Meeting
Organizers |
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Trainers |
Jason W |
Date |
Friday Mar 14, 2014 |
Location |
Conference Room 308 4:00-6:30 (16:00-18:30) |
Workshop Checklist ?????
1. Wi-Fi enabled CHARGED laptop and power supply:
- The conference room has limited charging/power - so please charge your laptop ahead of time ?????,??????
- Please have JAVA installed and enabled (help)
- Please have an up-to-date web browser (Recommended Firefox or Safari ) (?????????????????????JAVA)
2. iPlant Account (????????????)
- Get your free account at http://user.iplantcollaborative.org. Once you have your account, go to https://user.iplantcollaborative.org/dashboard/ and under Available Services, request access to Atmosphere. Indicate that you are attending a workshop when you are asked for justification.
3. Download VNC Viewer (?? VNC Viewer)
- Download the DMG (for MAC) or exe (for PC): http://www.realvnc.com/download/viewer/
Workshop Links ???????
Here are a few important links that you may wish to refer to during and after the workshop:
Account/Password Problems
iPlant Help and Discussion Forums
General iPlant Support Issues
iPlant Privacy (and other) policies - "Your Data is Your Data"
- www.iplantcollaborative.org/privacy
- www.iplantcollaborative.org/about/data-set-hosting
- www.iplantcollaborative.org/about/general-usage-policy
Workshop Program (Friday, Mar 14) ? ????
Time |
Activity |
Slides |
Handout/Instructions |
Links/Resources |
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16:00 |
Welcome, overview of iPlant |
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16:20 |
Conducting and analysis in the Discovery Environment |
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16:40 |
Managing Data with iPlant |
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17:00 |
Cloud Computing with Atmosphere |
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17:20 |
Choose an activity |
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17:20 |
A) Starting RNA-Seq using Tuxedo Workflow |
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B) Starting GWAS with GBS |
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C) Explore on your own |
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17:50 |
Education - DNA Subway - Green Line and Maize Annotation for Undergrads |
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18:00 |
Wrap up and where to get help |
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