20150719 Bioinformatics Workshop at AZCTE
Event Organizer | Debra James (AZED) |
|---|---|
iPlant Trainers | Uwe Hilgert (BIO5) |
TAs | Cheryl Blake (PCC); James De La Rosa (PCC) |
Date | July 19, 2015 |
Time | 13:00-17:00 (mas o menos) |
Location | Loews Ventana Resort 7000 N Resort Dr, Tucson, AZ 85750 Ventana Canyon-Lab 2 Room |
Required Workshop Prep
1. iPlant Account
Get your free account at http://user.iplantcollaborative.org. (Make sure to REMEMBER your username and password.) Please register with an institutional email account (e.g. '.edu' or '.org') only these types of email addresses will be granted access to the iPlant cloud service Atmosphere (see next bullet).
2. Laptop
Please bring your own WiFi enabled laptop to the workshop. Make sure your laptop has the following:
Internet Browser: Please have an up-to-date web browser (We strongly recommend Firefox or Safari - Internet Explorer and Chrome have Java and other compatibility issues.)
Java: Have JAVA installed, enabled and working with Firefox or Safari. (Help)
4. Pre-Workshop Guide and Homework
Download and print this manual to get the most out of the workshop.
Complete this Pre-Workshop Survey
Etherpad/Chatroom
We will use the following Etherpad for instant & shared communications during the workshop: https://etherpad.mozilla.org/eYOfsFktUW
Instructional Materials
Materials are downloadable/accessible from the Resources column in the Workshop Agenda below.
Workshop Agenda
Time | Description | Objectives | Tools | Sources | Resources | Links |
12:30 | Doors Open / Sign-in / Set up |
|
|
| Pre-Survey | |
|---|---|---|---|---|---|---|
01:00 | Welcome - Self-Introductions |
|
|
| ||
1:15 | Overview | Relatedness By Descent Mobile Genetic Elements (Transposons) Polymorphism Allele |
|
|
| |
01:30 | Wet lab
| Identify personal genotype at PV92 locus
| MolBio lab equipment
MolBio lab supplies
|
|
| |
02:30 | eLab
| Identify PV92 locus in data bases
| WWW
|
| ||
03:00 | Break |
|
|
|
|
|
03:15 | eLab
| Examine PV92 locus in human genome
| WWW
|
|
| |
04:00 | Wet lab
| Identify personal genotype at PV92 locus
| MolBio lab equipment
|
|
| |
04:15 | eLab
| Identify and analyze all states of PV92 known to man | WWW
|
| Human PV92 locus
Bioinformatics | |
04:45 | Wet lab
| Identify personal genotype at PV92 locus
Understand population genetics
| MolBio lab equipment
WWW
|
| ||
05:00 m.o.m. | Dismissal |
|
|
|
| |
| Consultations | Still questions? |
|
|
|
|
Participants
Alonso, Martha Celia | Douglas High School; Douglas, AZ |
|
Chamberlain, Karen A | Central Arizona Valley Institute of Technology (CAVIT); Coolidge, AZ |
|
Cherry, Amanda | Mesa High School; Mesa, AZ |
|
DeJesus, Jo | Tuba City High School; Tuba City, AZ |
|
Dunn, Erynn | Casa Verde High School; Casa Grande, AZ |
|
Ford, Matt | Chino Valley High School; Chino Valley, AZ |
|
Griego, Ken | Miami High School; Miami, AZ |
|
Hoover, Kathy | KOFA High School; Yuma, AZ |
|
Landry, Marni | Paradise Valley High School; Phoenix, AZ |
|
Lettes, Andrew | Pueblo Magnet High School; Tucson, AZ |
|
Livingston, Michele | Marana High School; Tucson, AZ |
|
Lord, Peggy | Stapley Junior High School; Mesa, AZ |
|
Scaife, Rick | Valley Vista High School; Surprise, AZ |
|
Vreyens, John | Chino Valley High School; Chino Valley, AZ |
|
Zeiher, Carolyn | Canyon Del Oro High School; Oro Valley, AZ |
|
Logistics, Accommodations, and other details
Arrival Time
Please arrive at 12:30 PM for registration to avoid delays to the workshop.