2012 07 07 BSA
Point of Contact: |
Johanne Stogran |
|---|---|
Catering Contact: |
Karen L. Lovett |
iPlant Organizer: |
|
Staff attending: |
Naim Matasci, Jason Williams, Sheldon McKay |
Location: |
Greater Columbus Convention Center |
Dates: |
July 7-11, 2012 |
Conference URL: |
Workshop Goal
The goal of this workshop is to demonstrate some of the ways that iPlant Cyberinfrastructure can advance your scientific objectives. As you navigate the through demonstrations and hands-on activities presented at the workshop, you will gain a sense of how to use iPlant tools and services for your investigations.
DNA Subway Agenda
Time |
Presentation |
Slides |
Links |
|---|---|---|---|
08:00AM - 08:15AM |
Welcome/Sign-in |
|
|
08:15AM - 08:30AM |
Introductions and workshop overview |
|
|
08:30AM - 09:00 AM |
Introduction to iPlant and overview of DNA Subway Workshop |
|
|
09:00AM - 10:00AM |
Gene Annotation as an introduction to Molecular Biology |
|
|
10:00AM - 12:00PM |
DNA Barcoding in the classroom (Lab exercise) |
|
|
12:00PM - 12:30PM |
LUNCH |
|
|
12:30PM - 02:00PM |
Gene Annotation Projects |
|
|
02:00PM - 02:30PM |
Non-coding DNA/Transposons - Yellow Line |
|
|
02:30PM - 02:45PM |
Break |
|
|
02:45PM - 03:15PM |
Blue Line: DNA Barcoding and phylogenetics |
|
|
03:15PM - 04:00PM |
Review and PCR results |
|
|
04:00PM - End |
Workshop summary and conclusion |
|
|
iPlant Tools and Services Workshop Agenda
We will be using a basic RNA-Seq as a worked example to demonstrate various components of the iPlant cyber-infrastructure.
Sunday, July 8
Time |
Presentation |
Slides |
Links |
|---|---|---|---|
1:00 PM-1:15 PM |
Introduction to iPlant |
|
|
1:15 PM-1:30 PM |
Discovery Environment walk through |
||
1:30 PM - 2:30 PM |
RNA-Seq in the in the Discovery Environment |
||
2:30 PM - 2:45 PM |
break |
|
|
2:45 PM - 4:00 PM |
RNA-Seq in Atmosphere |
Workshop Participants
DNA Subway
Name |
User Acct |
|
|---|---|---|
Temitope Adeyemi |
topssy4u@yahoo.co.uk |
no acct |
Gregory Brown |
gkbrown@uwyo.edu |
needs Subway |
Robert Child |
dlihctrebor@gmail.com |
needs all |
Sterling Field |
field.68@buckeyemail.osu.edu |
no acct |
Noémie Graignic |
noemie.graignic@uqat.ca |
no acct |
Timothy Hammer |
thamm009@odu.edu |
no acct |
David Hearn |
dhearn@towson.edu |
X |
James Jones |
jjones0@unbc.ca |
no acct |
Peris Kamau |
periskamau2@yahoo.com |
no acct |
Joo-hwan Kim |
kimjh2009@gachon.ac.kr |
no acct |
Jessie Lanterman |
Lanterman.2@buckeyemail.osu.edu |
no acct |
Nara Nara |
bhznara@yahoo.com.br |
no acct |
Oluwatoyin Ogundipe |
toyin60@yahoo.com |
no acct |
Andrew Pais |
alpais@ncsu.edu |
X |
Kim Parfitt |
parfittk@laramie1.org |
no acct |
Mangaiyarkarasi Ravirajan |
mangai33@yahoo.co.in |
no acct |
Hunter Shanks |
hshan004@odu.edu |
no acct |
Huaitong XU |
Huaitong.Xu@uqat.ca |
no acct |
David Zaya |
dzaya1@uic.edu |
no acct |
Elaine Zhang |
ezhang@ucsc.edu |
no acct |
Yiqin Zhou |
Yiqin.Zhou@uqat.ca |
no acct |
iPlant Workshop
Actual Participants Sign-up Sheet
Name |
User Acct |
|
|---|---|---|
Alexa DiNicola |
adinicola@collegeofidaho.edu |
no acct |
Lisa Wallace |
LisaWallace@biology.msstate.edu |
no acct |
James Heaney |
jheaney@ufl.edu |
X |
Catherine Bush |
cmbush@valdosta.edu |
no acct |
Scott Vernon |
svernon2@kent.edu |
no acct |
Cheng-Te Hsu |
chestnut123tw@gmail.com |
no acct |
Kara Butterworth |
butterworthkara@gmail.com |
no groups |
David Tank |
dtank@uidaho.edu |
no Atmo |
Vincent Chiappetta |
chiappet@yu.edu |
no acct |
Sunita Yadav-Pauletti |
yadavps@mail.uc.edu |
no acct |
Heidi Meudt |
heidim@tepapa.govt.nz |
no Atmo |
Francisco Gomez |
francisco.gomez85@gmail.com |
no acct |
Norman Wickett |
nwickett@chicagobotanic.org |
no Atmo |
Kyle Dexter |
kgdexter@gmail.com |
no acct |
Koji Takayama |
gen33takayama@gmail.com |
no acct |
Susanne Gnagy |
sgnagys@gmail.com |
no acct |
Daniel Park |
dnpark@ucdavis.edu |
no acct |
Matthew Johnson |
mgj4@duke.edu |
no Atmo |
Madhav Nepal |
Madhav.Nepal@sdstate.edu |
no Atmo |