2012 07 07 BSA
Point of Contact: | Johanne Stogran |
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Catering Contact: | Karen L. Lovett |
iPlant Organizer: | |
Staff attending: | Naim Matasci, Jason Williams, Sheldon McKay |
Location: | Greater Columbus Convention Center |
Dates: | July 7-11, 2012 |
Conference URL: |
Workshop Goal
The goal of this workshop is to demonstrate some of the ways that iPlant Cyberinfrastructure can advance your scientific objectives. As you navigate the through demonstrations and hands-on activities presented at the workshop, you will gain a sense of how to use iPlant tools and services for your investigations.
DNA Subway Agenda
Time | Presentation | Slides | Links |
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08:00AM - 08:15AM | Welcome/Sign-in |
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08:15AM - 08:30AM | Introductions and workshop overview |
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08:30AM - 09:00 AM | Introduction to iPlant and overview of DNA Subway Workshop |
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09:00AM - 10:00AM | Gene Annotation as an introduction to Molecular Biology |
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10:00AM - 12:00PM | DNA Barcoding in the classroom (Lab exercise) |
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12:00PM - 12:30PM | LUNCH |
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12:30PM - 02:00PM | Gene Annotation Projects |
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02:00PM - 02:30PM | Non-coding DNA/Transposons - Yellow Line |
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02:30PM - 02:45PM | Break |
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02:45PM - 03:15PM | Blue Line: DNA Barcoding and phylogenetics |
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03:15PM - 04:00PM | Review and PCR results |
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04:00PM - End | Workshop summary and conclusion |
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iPlant Tools and Services Workshop Agenda
We will be using a basic RNA-Seq as a worked example to demonstrate various components of the iPlant cyber-infrastructure.
Sunday, July 8
Time | Presentation | Slides | Links |
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1:00 PM-1:15 PM | Introduction to iPlant |
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1:15 PM-1:30 PM | Discovery Environment walk through | ||
1:30 PM - 2:30 PM | RNA-Seq in the in the Discovery Environment | ||
2:30 PM - 2:45 PM | break |
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2:45 PM - 4:00 PM | RNA-Seq in Atmosphere |
Workshop Participants
DNA Subway
Name | User Acct | |
|---|---|---|
Temitope Adeyemi | topssy4u@yahoo.co.uk | no acct |
Gregory Brown | gkbrown@uwyo.edu | needs Subway |
Robert Child | dlihctrebor@gmail.com | needs all |
Sterling Field | field.68@buckeyemail.osu.edu | no acct |
Noémie Graignic | noemie.graignic@uqat.ca | no acct |
Timothy Hammer | thamm009@odu.edu | no acct |
David Hearn | dhearn@towson.edu | X |
James Jones | jjones0@unbc.ca | no acct |
Peris Kamau | periskamau2@yahoo.com | no acct |
Joo-hwan Kim | kimjh2009@gachon.ac.kr | no acct |
Jessie Lanterman | Lanterman.2@buckeyemail.osu.edu | no acct |
Nara Nara | bhznara@yahoo.com.br | no acct |
Oluwatoyin Ogundipe | toyin60@yahoo.com | no acct |
Andrew Pais | alpais@ncsu.edu | X |
Kim Parfitt | parfittk@laramie1.org | no acct |
Mangaiyarkarasi Ravirajan | mangai33@yahoo.co.in | no acct |
Hunter Shanks | hshan004@odu.edu | no acct |
Huaitong XU | Huaitong.Xu@uqat.ca | no acct |
David Zaya | dzaya1@uic.edu | no acct |
Elaine Zhang | ezhang@ucsc.edu | no acct |
Yiqin Zhou | Yiqin.Zhou@uqat.ca | no acct |
iPlant Workshop
Actual Participants Sign-up Sheet
Name | User Acct | |
|---|---|---|
Alexa DiNicola | adinicola@collegeofidaho.edu | no acct |
Lisa Wallace | LisaWallace@biology.msstate.edu | no acct |
James Heaney | jheaney@ufl.edu | X |
Catherine Bush | cmbush@valdosta.edu | no acct |
Scott Vernon | svernon2@kent.edu | no acct |
Cheng-Te Hsu | chestnut123tw@gmail.com | no acct |
Kara Butterworth | butterworthkara@gmail.com | no groups |
David Tank | dtank@uidaho.edu | no Atmo |
Vincent Chiappetta | chiappet@yu.edu | no acct |
Sunita Yadav-Pauletti | yadavps@mail.uc.edu | no acct |
Heidi Meudt | heidim@tepapa.govt.nz | no Atmo |
Francisco Gomez | francisco.gomez85@gmail.com | no acct |
Norman Wickett | nwickett@chicagobotanic.org | no Atmo |
Kyle Dexter | kgdexter@gmail.com | no acct |
Koji Takayama | gen33takayama@gmail.com | no acct |
Susanne Gnagy | sgnagys@gmail.com | no acct |
Daniel Park | dnpark@ucdavis.edu | no acct |
Matthew Johnson | mgj4@duke.edu | no Atmo |
Madhav Nepal | Madhav.Nepal@sdstate.edu | no Atmo |