2012 09 12 TSW Hinxton, UK, Animal Biotechnology Working Group

Page Contents

Pre-Workshop Homework

1. Get iPlant credentials at https://user.iplantcollaborative.org/register.
2. Please try out your iPlant credentials to ensure you have access. You can Log-in from user.iplantcollaborative.org, click the button "iPlant Login"

• Once authenticated click the "My Services" link
• Under "My Services" please ensure you have access to: Atmosphere, Discovery Environment, iPlant Data Store. You can also request access to other services here
• If you have account problems, please email support@iplantcollaborative.org

3. Please check your email, and this wiki prior to the workshop, as this is the way we will communicate any important changes.

Workshop Notes

Here are a few important links that you may wish to refer to during and after the workshop:

Account/Password Problems http://user.iplantcollaborative.org

• user.iplantcollaborative.org

iPlant Help and Discussion Forums

• forums.iplantcollaborative.org/

General iPlant Support Issues

• support@iplantcollaborative.org

iPlant Privacy (And other) policies - "Your Data is Your Data"

• www.iplantcollaborative.org/privacy
• www.iplantcollaborative.org/about/data-set-hosting
• www.iplantcollaborative.org/about/general-usage-policy

Goal

The goal of this workshop is to demonstrate some of the ways that iPlant Cyberinfrastructure can advance your scientific objectives.
As you navigate the through demonstrations and hands-on activities presented at the workshop, you will gain a sense of how to consume
and customize iPlant tools and services for your investigations.

Agenda

Please check here for the latest updates to this workshop agenda

Wednesday September 12th

* Concurrent session 2:  For participants not fully interested by in depth training on iPlant a preliminary meeting will start the discussion on data sharing possibilities and access to large --omics datasets, people are free to join during during the session.  Intellectual property issues as well as integration to form a broad community based resource.  The participants will develop a draft document outline capturing these issues, priorities, and potential solutions for improving transatlantic data sharing. This document will be shared to the meeting participants the next day

Attendee List

• Cataldi@apre.it
• Dewayne.Shoemaker@ars.usda.gov
• Eduardo.Casas@ars.usda.gov
• jeff.silverstein@ars.usda.gov
• yniv.palti@ars.usda.gov
• LIUZHAN@auburn.edu
• Peter.Dovc@bf.uni-lj.si
• sburgess@cals.arizona.edu
• orozco-terwengelpa@cardiff.ac.uk
• cedric.notredame@crg.es
• darek.kedra@crg.eu
• mckays@cshl.edu
• ware@cshl.edu
• laura@ebi.ac.uk
• anne-sophie.lequarre@ec.europa.eu
• alessandra.crisa@entecra.it
• compugene@gmail.com
• fionammccarthy@gmail.com
• moghadamhooman@gmail.com
• marlies.dolezal@gmx.at
• sarris@her.hcmr.gr
• jreecy@iastate.edu
• elisabetta.giuffra@jouy.inra.fr
• marie-laure.endale@jouy.inra.fr
• elsikc@missouri.edu
• schnabelr@missouri.edu
• reebpabl@msu.edu
• gragland@nd.edu
• lmatukumalli@nifa.usda.gov
• hif1@psu.edu
• mick.watson@roslin.ed.ac.uk
• amonida@sanger.ac.uk
• jla1@sanger.ac.uk
• Erik.Bongcam@slu.se
• Hossein.Jorjani@slu.se
• alessandra.stella@tecnoparco.org
• Christophe.Klopp@toulouse.inra.fr
• miguel.perez@uab.cat
• dahahn@ufl.edu
• mlpalmeira@ulg.ac.be
• wouter.coppieters@ulg.ac.be
• Neibergs@wsu.edu
• Martien.Groenen@wur.nl
• hendrik-jan.megens@wur.nl

Getting to the Workshop

Travel: https://registration.hinxton.wellcome.ac.uk/travel_page.asp

Survey

iPlant is by, for, and of the community. It is important for us to hear from you about what works and what doesn't (material, services, tools, training techniques, etc.). We'd also like to know if there are computational bottlenecks in your research that iPlant could target to assist in developing community-scale solutions.

https://www.surveymonkey.com/s/ToolsServices_post