2013 01 11 TSW San Diego
Organizers | |
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Trainers | Damian Gessler, Sheldon McKay, Nirav Merchant, Joshua Stein, Matthew Vaughn, Jason Williams |
Date | Jan 11, 2013 |
Location | Sheraton Hotel and Marina, San Diego, CA |
Please Remember to Bring
Wi-Fi enabled laptop and power supply:
Workshop Notes
Here are a few important links that you may wish to refer to during and after the workshop:
Account/Password Problems
iPlant Help and Discussion Forums
General iPlant Support Issues
iPlant Privacy (And other) policies - "Your Data is Your Data"
Workshop Handout
Workshop Program
Friday, January 11, 2013
Time | Description | Slides | Links | Presenter |
12:45 PM - 01:00 PM | Arrive / Sign-in / Verify iPlant Accounts/ Grab Lunch |
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01:00 PM - 01:20 PM | Welcome - Presenter/Participant Self-Introductions |
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01:20 PM - 01:30 PM | A (short!) Overview of the iPlant Collaborative |
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01:30 PM - 02:15 PM |
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02:15 PM - 02:45 PM |
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02:45 PM - 03:00 PM | Coffee Break |
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03:00 PM - 04:00 PM | Using the DE to Examine Differential Expression With RNA-Seq |
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04:00 PM - 05:00 PM |
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05:00 PM - 05:15 PM | Stretch Break |
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05:15 PM - 05:45 PM | GBS/GWAS Pipeline Demo | |
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05:45 PM - 06:10 PM |
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06:10 PM - 06:30 PM | Utilizing the iPlant API |
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06:20 PM - 06:50 PM | iPlant Semantic Web Demo | |||
06:50 PM - 07:00 PM | Workshop summary and conclusion |
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Attendee List
Name | Research Area | Acct Status | |
|---|---|---|---|
Eric Haas-Stapleton | Molecular Biosciences | Eric.Haas-Stapleton@csulb.edu | needs Atmo |
Hashini Batugedara | Molecular Biosciences | hashinib@msn.com | needs Atmo |
Aniska Chikhalya | Molecular Biosciences | achikhalya@gmail.com | needs Atmo |
Ingrid Lindquist | Genetics and Nucleic Acids | iel@ncgr.org | needs Atmo |
Frank You | Bioinformatics | frank.you@agr.gc.ca | needs Atmo |
Christopher Bidwell | Genetics and Nucleic Acids | cbidwell@purdue.edu | needs Atmo |
Loretta Johnson | Ecological Studies | johnson@ksu.edu | needs Atmo |
Yvonne Badke | Genomics | badkeyvo@msu.edu | needs Atmo |
Imad Eujayl | Genetics and Nucleic Acids | imad.eujayl@yahoo.com | X |
Christopher Ashwell | Genetics and Nucleic Acids | cmashwel@ncsu.edu | needs Atmo |
Sam Fox | Plant Biology | foxsa@onid.orst.edu | needs Atmo |
Prabin Tamang | Genetics and Nucleic Acids | prabin.tamang@ndsu.edu | needs Atmo |
Anjan Neupane | Plant Biology | anjan.neupane@ndsu.edu | needs Atmo |
Jillian Foerster | Genetics and Nucleic Acids | jfoerster@wisc.edu | X |
Laurel Cooper | Plant Biology | cooperl@science.oregonstate.edu | needs Atmo |
Chris Town | Plant Biology | cdtown@jcvi.org | needs all |
Sean Rogers | Plant Biology | srogers@msu.edu | X |
Srikar Chamala | Biological and Critical Systems | srikarchamala@gmail.com | needs Atmo |
Yogendra Kalenahalli CANCELLED flight delay | Plant Biology | yogendra.kalenahalli@mcgill.ca | needs Atmo |
Mohammed Al Abri | Genetics and Nucleic Acids | maa288@cornell.edu | X |
Timothy Swaller | Visualization, Graphics, and Image Processing | tswaller@ceres.net | needs Atmo |
shivappa hukkeri CANCELLED flight delay | Biochemistry and Molecular Structure and Function | shivappa.hukkeri@gmail.com | needs Atmo |
Jennifer Shelton | Plant Biology | sheltonj@ksu.edu | has Atmo, needs "community" services |
Michael Thomson | Genetics and Nucleic Acids | m.thomson@irri.org | needs Atmo |
Mohen Ekhtiari CANCELLED | Genetics and Nucleic Acids | e_ekhtiari@yahoo.com | no acct |
MeiYee Law | Genetics and Nucleic Acids | mylaw.09@gmail.com | needs Atmo |
Lukas Mueller | Plant Biology | lam87@cornell.edu | X |
Mohammad Khan | Plant Biology | mohammad.khan.1@kaust.edu.sa | no acct |
Igor Yakovlev | Molecular Biosciences | yai@skogoglandskap.no | needs Atmo |
Richard Buggs | Genetics and Nucleic Acids | r.buggs@qmul.ac.uk | needs Atmo |
Dr. Mansir Yusuf | Genetics and Nucleic Acids | mansiryusuf@yahoo.com | no acct |
Rosangela Resende | Forage Breeding | rmsimeao@gmail.com | needs Atmo |
Wenbin Mei CANCELLED | Computer and Computation Research | wmei@ufl.edu | needs Atmo |
Vijay Tiwari | Plant Biology | vijtiwari@gmail.com | X |
Mahmoud Wahb-Allahpl | Plant Breeding | mwahballah@ksu.edu.sa | no acct |
Abdelhalim Ghazy | Plant Biotechnology | ghazyai@yahoo.com | no acct |
Clay Birkett | Genetics and Nucleic Acids | claybirkett@gmail.com | needs Atmo |
Laura Miller | Cell Biology | laura.miller@ars.usda.gov | needs Atmo |