2013 12 04 TSW CSHL Plant Genomes and Biotechnology Meeting
Organizers |
Jason Williams |
---|---|
Trainers |
Mike S., Josh S., Jason Williams |
Date |
December 4th, 2013 |
Location |
Hershey West Conference Room |
Watching this event online
You can view this on Adobe Connect:
http://cshl.adobeconnect.com/pgbmeeting/
or
LiveStream (no registration required):
https://new.livestream.com/cshl-dnalc/cshl-tsw
Please Remember to Bring
- Wi-Fi enabled laptop and power supply:
- Please have JAVA installed and enabled (help)
- Please have an up-to-date web browser (Recommended Firefox or Safari )
- Please downloadVNC Viewer (For windows, if you are unsure of which version to download, select the 32bit.exe file)
Workshop Notes
Here are a few important links that you may wish to refer to during and after the workshop:
Account/Password Problems
iPlant Help and Discussion Forums
General iPlant Support Issues
iPlant Privacy (And other) policies - "Your Data is Your Data"
- www.iplantcollaborative.org/privacy
- www.iplantcollaborative.org/about/data-set-hosting
- www.iplantcollaborative.org/about/general-usage-policy
Workshop Handout
Workshop Program
Workshop Program (Wednesday December 4th)
Time |
Description |
Slides |
Links |
Presenter |
12:00 PM |
Boxed-Lunch / Sign-in / Verify iPlant Accounts/ Welcome |
|
Jason |
|
12:15 PM |
Welcome - Presenter/Participant Self-Introductions/ Overview of iPlant Discovery Environment |
|
Jason |
|
12:30 PM |
Whole Genome Assembly with iPlant |
|
Mike |
|
02:00PM |
Coffee Break |
|
|
|
02:15 PM |
Atmosphere Cloud Computing Environment |
|
Josh |
|
02:45 PM |
Genome Annotation with MAKER |
Josh |
||
04:00 PM |
RNA-Seq in the iPlant Discovery Environment |
Jason |
||
04:30 PM |
Peer Resources: KBASE and Gramene |
|
Marcela/Doreen |
|
05:00 PM |
Workshop summary and conclusion |
|
Jason |
Attendee List (max: 25)
Name |
Research Area |
Acct Status |
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Who Should Attend?
Any investigator (PIs, post-docs, grad students, industry users) who is or will be working with large datasets and computation-intensive research questions in the life-sciences (plants and animals!). Space is limited; register at:
What Should I Bring?
This workshop is hands-on so please bring a Wi-fi enabled laptop. Lunch and breaks will be provided.