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2013 12 04 TSW CSHL Plant Genomes and Biotechnology Meeting

2013 12 04 TSW CSHL Plant Genomes and Biotechnology Meeting

Organizers

Jason Williams

Trainers

Mike S., Josh S., Jason Williams

Date

December 4th, 2013

Location

Hershey West Conference Room
Cold Spring Harbor Laboratory
1 Bungtown Rd., Cold Spring Harbor, NY

Watching this event online

You can view this on Adobe Connect:

http://cshl.adobeconnect.com/pgbmeeting/

or

LiveStream (no registration required): 

https://new.livestream.com/cshl-dnalc/cshl-tsw

Please Remember to Bring

  • Wi-Fi enabled laptop and power supply:
  1. Please have JAVA installed and enabled (help)
  2. Please have an up-to-date web browser (Recommended Firefox or Safari )
  3. Please downloadVNC Viewer (For windows, if you are unsure of which version to download, select the 32bit.exe file)

Workshop Notes

Here are a few important links that you may wish to refer to during and after the workshop:

Account/Password Problems

iPlant Help and Discussion Forums

General iPlant Support Issues

iPlant Privacy (And other) policies - "Your Data is Your Data"

Workshop Handout

Workshop Program

Workshop Program (Wednesday December 4th)

Time

Description

Slides

Links

Presenter

12:00 PM

Boxed-Lunch / Sign-in / Verify iPlant Accounts/ Welcome

 

Pre-Survey

Jason

12:15 PM

Welcome - Presenter/Participant Self-Introductions/ Overview of iPlant Discovery Environment

 

Slides

Jason

12:30 PM

Whole Genome Assembly with iPlant

 

Slides

Mike

02:00PM

Coffee Break

 

 

 

02:15 PM

Atmosphere Cloud Computing Environment

slides

 

Josh

02:45 PM

Genome Annotation with MAKER

slides

Tutorial

Josh

04:00 PM

RNA-Seq in the iPlant Discovery Environment

slides

Tutorial

Jason

04:30 PM

Peer Resources: KBASE and Gramene

 

Marcela/Doreen

05:00 PM

Workshop summary and conclusion


Post Survey

Jason

Attendee List (max: 25)

Name

Research Area

E-mail

Acct Status

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Who Should Attend?

Any investigator (PIs, post-docs, grad students, industry users) who is or will be working with large datasets and computation-intensive research questions in the life-sciences (plants and animals!).  Space is limited; register at:

What Should I Bring?

This workshop is hands-on so please bring a Wi-fi enabled laptop. Lunch and breaks will be provided.