2013 03 14 TSW Maize Genetics

Uwe Hilgert and Sheldon McKay

Sheldon McKay; Josh Stein

March 14, 2013, 10 AM - 3 PM

Pheasant Run Resort, Utrillo Room, St Charles, IL

http://www.iplantcollaborative.org/forms/registration-form-iplant-tools-and-services-workshop-maize-genetics-conference-2013-mar14th

Time

Description

Slides

Links

Instructor

10:00 AM - 10:15 AM

Arrive / Sign-in / Verify iPlant Accounts

10:15 AM - 10:30 AM

Welcome - Presenter/Participant Self-Introductions

10:30 AM - 10:45 AM

Overview of the iPlant Collaborative

Short iPlant Intro

Getting Started with iPlant

Sheldon Mckay

10:45 AM - 11:30 AM

Overview of the iPlant Discovery Environment (DE)

DE Overview

DE Manual

Josh Stein

11:30 AM - 12:00 PM

iPlant Data Store - Managing "Big Data"

Data Store Overview

Data Store Tutorials

• Demo URLs
• iDrop Download
• iCommands

Sheldon McKay

12:00 PM - 1:00 PM

Lunch Break

1:00 PM - 2:20 PM

RNA-Seq in the Discovery Environment and Atmosphere

Introduction

/wiki/spaces/eot/pages/241585220

Sheldon McKay

2:20 PM - 2:30 PM

The DNA Subway

Slides

Sheldon McKay

2:30 PM - 3:00 PM

Introduction to GBS and GWAS in the iPlant DE

Slides

Josh Stein

Jack Gardiner

Genetics and Nucleic Acids

Iowa State University

jack.m.gardiner@gmail.com

needs Atmo

Jonathan Vogel

Plant Biology

BASF Plant Science

Jonathan.Vogel@basf.com

needs Atmo

Kokulapalan Wimalanathan

Plant Biology

Iowa State University

kokul@iastate.edu

X

John Portwood

Neuroscience Biology

Iowa State University

portwoodii@gmail.com

needs Atmo

Carson Andorf

Bioinformatics, Maize Genetics

USDA-ARS

carson.andorf@gmail.com

needs Atmo

Toni Kazic

Cross-Disciplinary Activities

University of Missouri

kazict@missouri.edu

needs Atmo

Jacqueline Richter

Bioinformatics and Computational Biology

MaizeGDB

jdr1191@iastate.edu

needs Atmo

Kyler Carlson

Genetics and Nucleic Acids

Truman State University

klc5542@truman.edu

needs Atmo

Diane Janick-Buckner

Genetics and Nucleic Acids

Truman State University

djb@truman.edu

needs Atmo

Robie Mason-Gamer

Plant Biology

University of Illinois at Chicago

robie@uic.edu

needs Atmo

Emily Mauch

Undecided

Iowa State University

edmauch@iastate.edu

needs Atmo

Brent Buckner

Genetics and Nucleic Acids

Truman State University

bbuckner@truman.edu

X

Lauren Choate

Genetics and Nucleic Acids

Truman State University

lac4778@truman.edu

X

Kevin Bodker

Genetics and Nucleic Acids

Truman State University

kab2875@truman.edu

needs Atmo

Kevin Kaifer

Genetics and Nucleic Acids

Truman State University

kevinkaifer@gmail.com

needs Atmo

Stella Salvo

Developmental Biology

University of Wisconsin - Madison

ssalvo@wisc.edu

needs Atmo

Avimanyou Vatsa

Computational Biology

University of Missouri Columbia

akvhx@mail.missouri.edu

needs Atmo

Denise Costich

Biological Instrumentation and Resources

CIMMYT

d.costich@cgiar.org

needs Atmo

Clémentine Vitte

Genetics and Nucleic Acids

CNRS

vitte@moulon.inra.fr

needs Atmo

Kashi Revanna

Bioinformatics

University of North Texas

kashi.revanna@unt.edu

needs Atmo

Hao Wu

Biochemistry and Molecular Structure and Function

Baylor University

jerrywu1987@gmail.com

needs Atmo

Qunfeng Dong

Bioinformatics

University of North Texas

qunfeng.dong@unt.edu

needs Atmo

Norman Best

Plant Biology

Purdue University

nbbest@purdue.edu

needs Atmo

Kevin Chu

Biochemistry and Molecular Structure and Function

Purdue University

chu16@purdue.edu

needs Atmo

Josh Budka

Genetics and Nucleic Acids

Purdue University

jsbudka@purdue.edu

needs Atmo

Beatriz Gomez

Bioinformatics

University of North Texas

beatrizgomez@my.unt.edu

needs Atmo

Vijay Vontimitta

Genetics and Nucleic Acids

Purdue University

vvontimi@purdue.edu

needs Atmo

Hongjun Liu

crop genetics and breeding

Sichuan Agricultural University

lhj20305@163.com

needs Atmo

Tyler Tiede

Genetics and Nucleic Acids

Purdue University

tiede@purdue.edu

needs Atmo

Xuerong Yang

animal science

iowa state university

xuerongy@iastate.edu

X

Feng Tian

Genetics and Nucleic Acids

China Agricultural University

ft55@cau.edu.cn

needs Atmo

Felix Frey

Plant Biology

Max-Planck-Institute for plant breeding research

frey@mpipz.mpg.de

needs Atmo

Frederike Horn

Plant Biology

Max Planck Institute for Plant Breeding Resaeach

horn@mpipz.mpg.de

needs Atmo

Addy Guzman Chavez

Plant breeding

CINVESTAV

addy.biotec@gmail.com

needs Atmo

Muhammad Malek Hossain

Plant Biology

Bangladesh Agricultural Research Institute

mmalek08@yahoo.com

needs Atmo

Nur Suhada Abu Bakar

Genetics and Nucleic Acids

Penn State University

nxa155@psu.edu

needs Atmo

Liliana Andres Hernandez

Computational Biology

Langebio Cinvestav

landres@langebio.cinvestav.mx

needs Atmo

Miguel Vallebueno

Paleogenomics

LANGEBIO-CINVESTAV

mvallebueno@langebio.cinvestav.mx

needs Atmo

Wei Li

Developmental Biology

Rutgers

wli@waksman.rutgers.edu

no acct

Maria Mateos-Hernandez

Molecular Biosciences

Purdue

mmateosh@purdue.edu

needs Atmo

Swayamjit Ray CANCELLED

Genetics and Nucleic Acids

Penn State University

szr146@psu.edu

needs Atmo

Temitope Salaam

Molecular Biosciences

University of Lagos

topesalaam@gmail.com

needs Atmo

Raymond Lindsey

Plant Biology

Purdue University

rslohs@aol.com

X

Gustavo Rodriguez

Biochem and Mol Structure and Function

CINVESTAV

guastavoeg2306@hotmail.com

Liliana Dondiego

Plant Biology

CINVESTAV

ibqdondiegolilly@gmail.com