2013 09 23 TSW Texas A&M
Organizers | |
|---|---|
Trainers | Jason Williams (CSHL), John Fonner (TACC) |
Date | Monday and Tuesday, Sept 23 - 24, 2013 |
Location | Department of Plant Pathology and Microbiology |
Please Remember to Bring
Wi-Fi enabled laptop and power supply:
Workshop Notes
Here are a few important links that you may wish to refer to during and after the workshop:
Account/Password Problems
iPlant Help and Discussion Forums
General iPlant Support Issues
iPlant Privacy (And other) policies - "Your Data is Your Data"
Workshop Program (Monday, September 23rd)
Time | Description | Slides | Links | Presenter |
09:00 AM | Arrive / Sign-in / Verify iPlant Accounts |
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09:30 AM | Welcome - Presenter/Participant Self-Introductions |
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| All |
09:45 AM | Overview of the iPlant Collaborative | Jason | ||
10:00 AM | Overview of the iPlant Discovery Environment (DE) | Jason | ||
10:45 AM | Coffee Break |
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11:00 AM | iPlant Data Store - Managing "Big Data" | John | ||
11:45 AM | Workflows in the DE; Phylogenetics Example | John | ||
12:15 PM | Lunch |
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01:15 PM | Using the DE for RNA-Seq | Jason | ||
02:15 PM | User Presentation: Transcriptome analyses of Brachypodium distachyon |
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03:00 PM | Break |
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03:15 PM | Atmosphere Cloud Computing | Jason | ||
04:00 PM | Tools for Image Analysis - Phytobisque | John | ||
04:30 PM | Workshop summary and conclusion | Jason |
Workshop Program (Tuesday, September 24th)
Time | Description | Slides | Links | Presenter |
|---|---|---|---|---|
09:30 AM | Visualization of RNA-Seq results in Atmosphere |
| Jason | |
10:15 AM | Getting started with Annotation: SOAPdeNovo and MAKER | Jason | ||
10:45 AM | Break |
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11:00 AM | Graduate Seminar on CI - Talk and discussion |
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| John |
12:00 PM | Lunch (on your own) |
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01:00 PM | Advanced CI: iPlant Foundation API |
| John | |
01:45 PM | iCommands and other Data Store applications: Get started with your own data |
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| John |
02:15 PM - End | Individual consultations |
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| Jason/John |
Attendee List (max: 30)
Name | Research Area | Acct Status | |
|---|---|---|---|
Marcos Oliveira | Plant Biol | marcos.oliveira@ag.tamu.edu | X |
Veria Alvarado | Plant Biol | veriachavez@yahoo.com | X |
JunMyoung Yu | Cell Biol | junmyu@gmail.com | X |
Julien Levy | Plant Biol | julienlevy@tamu.edu | X |
Fanhong Meng | Plant Biol | fmeng2@gmail.com | X |
Pei-cheng Huang | Plant Biol | masonhuang0208@tamu.edu | X |
Angelyn Hilton | Plant Biol | angelyn1128@tamu.edu | X |
Huan Zhang | Plant Biol | huanzhfly@gmail.com | X |
Sreenath Palle | Plant Biol | sreesree14@yahoo.com | X |
Mona Damaj | Plant Biol | mbdamaj@ag.tamu.edu | X |
Michelle Dominguez | Plant Biol | Mmdominguez@ag.tamu.edu | X |
Sabarinath Sundaram | Plant Biol | pksnath@neo.tamu.edu | X |
Will Cody | Plant Biol | willcody@tamu.edu | X |
Aravind Ravindran | Other | aravind.ravindran@ag.tamu.edu | X |
Kranthi Mandadi | Plant Biol | kmandadi@bio.tamu.edu | X |
Jesse Pyle | Molec Biosci | jessedpyle@tamu.edu | X |
Bryan Gibbon | Plant Biol | bryan_gibbon@baylor.edu | X but no groups |
Hector Miranda | Env Biol | mirandahc@tsu.edu |
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Vimlarani Chopra | Cell Biol | vimlarani.chopra@hccs.edu |
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Fatemah Mastouri | Bio & Critical Systems | fm79@cornell.edu |
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Arlene Pacheco | Mol Biosciences | arlenepacheco@tamu.edu |
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Ramadhika Damarwinasis | Plant Biol | rdamarwinasis@gmail.com | X |
Shabfam Eslamfam | Computer Research | shabnam127@hotmail.com |