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Update 3-30-15

Update 3-30-15

Mar 31, 2015

Completed tasks:

I have begun writing my python script for finding motifs in a sequence.  So far I can read a sequence and report back most common motifs using a sliding window method.

To do this week:
Continue writing script:
  -Change function inputs to a user input
  -Find a way to report position of motifs in complex data structures (This is a potentially a red flag)
            Think about creating a human/computer readable file that have starting and ending symbols.  Header should contain the motif and the times found.  Internal information will contain the source (chromosome) start, stop, strand.