Tutorials

Text editors** TextWrangler (OsX), Eclipse, Emacs, VI
Regular Expression:http://regexone.com
- Python Regular Expressions: https://docs.python.org/2/howto/regex.html
  - Website to test/evaluate/create/code/convert Regular Expression: https://regex101.com
VirtualBox: http://www.virtualbox.org/manual/ch01.html
- We recommend: http://virtualboxes.org/images/centos/
- Download CentOS 6.3
- (Number 13 on the list on this page)
Command-line linux: http://ryanstutorials.net/linuxtutorial/
- http://www.tutorialspoint.com/unix/
Document your work: Use a wiki** Get an iPlant account: http://user.iplantcollaborative.org
- With this account, you can create wikis with iPlant: https://pods.iplantcollaborative.org/wiki
Stash your code (and make it open source): GitHub** http://readwrite.com/2013/09/30/understanding-github-a-journey-for-beginners-part-1
- Cheat sheet: https://training.github.com/kit/downloads/github-git-cheat-sheet.pdf
Python:** Code academy: http://www.codecademy.com/en/tracks/python
- Rosalind: http://rosalind.info/problems/list-view/?location=python-village
- TutorialsPoint (brief but comprehensive coverage of basics, and nice additional sections on Object Oriented Programming and Regular Expressions)
  - http://www.tutorialspoint.com/python/

UA HPC: http://uits.arizona.edu/research-computing/hpc-services
Learning Python:** Safari online (available through the UA network): https://www.safaribooksonline.com/library/view/learning-python-5th/9781449355722/
- Many other great O’Reilly programming and software books available!

PLS 599 2014