Tutorials

Text editors** TextWrangler (OsX), Eclipse, Emacs, VI

Regular Expression:http://regexone.com

• Python Regular Expressions: https://docs.python.org/2/howto/regex.html

  • Website to test/evaluate/create/code/convert Regular Expression: https://regex101.com

VirtualBox: http://www.virtualbox.org/manual/ch01.html

• We recommend: http://virtualboxes.org/images/centos/

• Download CentOS 6.3

• (Number 13 on the list on this page)

Command-line linux: http://ryanstutorials.net/linuxtutorial/

• http://www.tutorialspoint.com/unix/

Document your work: Use a wiki** Get an iPlant account:  http://user.iplantcollaborative.org

• With this account, you can create wikis with iPlant:  https://pods.iplantcollaborative.org/wiki

Stash your code (and make it open source): GitHub** http://readwrite.com/2013/09/30/understanding-github-a-journey-for-beginners-part-1

• Cheat sheet: https://training.github.com/kit/downloads/github-git-cheat-sheet.pdf

Python:** Code academy: http://www.codecademy.com/en/tracks/python

• Rosalind: http://rosalind.info/problems/list-view/?location=python-village

• TutorialsPoint (brief but comprehensive coverage of basics, and nice additional sections on Object Oriented Programming and Regular Expressions)

  •  http://www.tutorialspoint.com/python/

UA HPC: http://uits.arizona.edu/research-computing/hpc-services

Learning Python:** Safari online (available through the UA network):  https://www.safaribooksonline.com/library/view/learning-python-5th/9781449355722/

• Many other great O’Reilly programming and software books available!