Baltzell - Programs
Programs
1. Execute myCoGe
- Shell script that unifies the myCoGe pipeline and allows for detailed error reports to be generated and emailed after each iteration.
- https://github.com/asherkhb/myCoGe/blob/master/execute_mycoge.sh
2. SNPScraper
- Webscraper for obtaining SNP variant data from the Personal Genome Project.
- https://github.com/asherkhb/myCoGe/blob/master/snpscraper.py
3. myCoGe
- Python library of functions necessary for the myCoGe pipeline.
- https://github.com/asherkhb/myCoGe/blob/master/myCoGe.py
4. Initiate
- Python script that performs the bulk of the myCoGe pipeline.
- https://github.com/asherkhb/myCoGe/blob/master/initiate.py
5. Finalize
- Python script to perform final functions, generate reports, email reports, and clean up system after each run.
- https://github.com/asherkhb/myCoGe/blob/master/finalize.py
6. BatchLoad
- Python script to obtain initial set of data, allows for errors due to large processing volume.
- https://github.com/asherkhb/myCoGe/blob/master/batch_downloader.py