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Update 4-21-15

Update 4-21-15

Apr 21, 2015

Completed:

  • I finished the motif script and it is ready to use on my sequence data.
  • I wrote a simple bash script to remove newlines in fasta file
  • scripts on github

Gotcha:

  • I tried running the script on my home computer and it was taking too long.  I need to learn how to use the HPC for running a job and how much time/cpu/RAM I need to request.