Mana Ohkura - HW3

The problem I want to solve:  What structural variations exist between the two different phenotypes that are present in Fungal species X?

What I need to solve it:  Bowtie2, DELLY, and possibly some linux commands or python scripts to parse the data.

Here is my code to Variables and Some Arithmetic:

bash-3.2$ python
Python 2.7.1 (r271:86832, Jul 31 2011, 19:30:53)
[GCC 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2335.15.00)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> a=975
>>> b=977
>>> c=(a**2)+(b**2)
>>> print c
1905154