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Tutorials List
Tutorials Table of Contents
Atmosphere Tutorials
DE Tutorials
Assemble a Genome Using SOAPdenovo (Workflow Tutorial)
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BLAST a Transcriptome (Workflow Tutorial)
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BWA_index_mem-0.7.10
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ChIP-seq Tutorial - BWA, Picard, HOMER, and IntersectBed
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CLASS 2.1.5 in Discovery Environment
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Cluster Orthologs and Paralogs and Assemble Custom Gene Sets (Workflow Tutorial)
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DE: Bulk metadata upload video tutorials
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Discover Variants Using SAM Tools (Workflow Tutorial)
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EMS mutant sites identification Workflow
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Evaluate and Pre-Process Sequencing Reads (Workflow Tutorial)
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fRNAkenseq (HTseq-with-BAM-input) Manual
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Hisat2-Cuffmerge v1.0
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HOMER_annoPeaks-4.8.3
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HOMER_findPeaks_4.8.3
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HOMER_makeTagDir_4.8.3
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intersectBed-2.26.0
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Kallisto-0.42.3-INDEX-QUANT-PE in the Discovery Environment
MAKER-P Atmosphere Tutorial
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mini SOAPdenovo (Tutorial)
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Mouse RNASeq DeSEQ2 pipe
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NCBI Sequence Read Archive (SRA) Submission (Workflow Tutorial)
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NCBI Whole Genome Shotgun (WGS) Submission Tutorial
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Picard_MarkDup-2.7.0
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Quality Control for High Throughput Sequence Data (Workflow Tutorial)
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RepeatModeler
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RMTA v1.5
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RMTA v2.1
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rnaQUAST 1.2.0 (denovo based) using DE
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StringTie-1.3.3_to_DESeq2_and_edegeR
Tutorial: Characterizing Differential Expression With RNA-Seq (Without Reference Genome)
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Velvet-1.2.10 Genome Assembly Workflow
Both Atmosphere and DE Tutorials
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Taxonomic Name Resolution Service (TNRS Tutorial)
Jetstream Tutorials
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RNA-seq Tutorial- STAR, StringTie and DESeq2*
RNA-seq Tutorial- HISAT2, StringTie and Ballgown*
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RNA seq tutorials- Kallisto and Sleuth*
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miR-PREFeR (microRNA PREdiction From small RNA-seq data)*
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RNA-seq Tutorial- HISAT2, StringTie and Ballgown using DE and Rstudio-Ballgown*
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Genomics Workflows
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Creating a Tutorial in the Learning Materials Space
How-to articles
RNA-seq Data Analysis in CyVerse
Blogs
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Tutorials Table of Contents
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DE Tutorials
DE Tutorials
kkennedy
Owned by
kkennedy
Last updated:
Dec 10, 2015
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