GATC09

Owned by Joshua Stein
Last updated: Aug 04, 2011Version comment
1 min read

E-mail correspondence:

Begin forwarded message:

From: Matthew Vaughn <vaughn@tacc.utexas.edu>
Date: August 3, 2011 3:48:27 PM EDT
To: Josh Stein <steinj@cshl.edu>
Cc: Shiran Pasternak <pasterna@cshl.edu>
Subject: Re: Touch bases tomorrow?

Behind the hidden curtain… take a look at dapple.iplantcollaborative.org/de under the In Progress tab. There are a few issues I need to document before turning people loose, not the least of which is that one needs to combine all files for a given library into tarballs and that pair-end files need to be interleaved into a single file. All can be done using tools in the DE and you only need to do it once before assembly. But enforcing these rules saves me a large amount of exception handling and makes the job staging process work better.

But.. I have 4 concurrent 64 core assembly jobs running on Ranger - thats more cores than the UA iPlant cluster has...

On Aug 3, 2011, at 2:40 PM, Josh Stein wrote:

Really cool!  How do I access this?  I don't see it from the live site.

Josh

On Aug 3, 2011, at 3:31 PM, Matthew Vaughn wrote:

Taken from the current build of the DE…. there's an equivalent screen for the BLASTX pipeline.

<Screen Shot 2011-08-03 at 2.28.31 PM.png>
On Aug 3, 2011, at 2:24 PM, Josh Stein wrote:

Any chance we can meet tomorrow?  Is ASPB still a target?

Thanks,
Josh

--
Matthew W. Vaughn, Ph.D.
Texas Advanced Computing Center, The University of Texas at Austin

phone: (949) 436-6642
google-talk: matt.vaughn@gmail.com
web: http://bit.ly/matthew-vaughn

Joshua Stein, PhD
Manager, Sci. Informatics III
Cold Spring Harbor Laboratory
steinj@cshl.edu http://ware.cshl.org/

--
Matthew W. Vaughn, Ph.D.
Texas Advanced Computing Center, The University of Texas at Austin

phone: (949) 436-6642
google-talk: matt.vaughn@gmail.com
web: http://bit.ly/matthew-vaughn

Joshua Stein, PhD
Manager, Sci. Informatics III
Cold Spring Harbor Laboratory
steinj@cshl.edu http://ware.cshl.org/