Metadata wish list

These are notes from the Austin workshop's afternoon session on metadata

See also following developer pages:
Metadata use cases
Metadata elements

Meeting notes

Types of metadata

  • Manually add an image to a node (from flickr, eol, etc)
  • Taxonomy
  • Character states
  • Focus on static data (rather than implementing algorithms for ancestral states)
  • Dynamic linking - i.e. use label to search or an image; add limits to prevent too many at once
  • Show character states as well as missing data
  • Indicate presence / absence of metadata in browsing mode
  • Ability to customize how we display metadata, i.e. metadata selection tool
  • Edge coloring is a very high priority for the trait evolution group. One possibility is allowing a gradient on an edge, too -- i.e., if a branch starts in state 0 and ends in state 1, gradient between the 0 and 1 colors rather than just painting it with state 1's color. Some other program could provide the information on colors at each node/edge (discrete states, continuous states, bootstrap support, path between two selected taxa, etc.) but the tree viewer must be able to consume and display this.
  • Show monophyletic or not, and uncertain position (Examples)

Ways to display metadata

  • Node icons - shape, size, colour
  • Branch colours and widths
  • Greyscale options for printing & presentation
  • Text labels
  • Encourage users to add semantic metadata so that a saved file contains appropriate links to ontologies, etc

For later:

Use of treemaps for metadata

Automated images for whole tree - this might be a separate service given a tree and an image source

Linking phylogeny to geography / Google Earth

Online data sources:
Biodiversity Heritage Library
EOL
Flickr
Morphbank

Should we focus on EOL as the major data provider?