Agenda:

Tool integration planning

Potential areas of interest:

• Subsetting
• Building supertrees
• Resolving polytomies
• Comparing trees
• Building consensus trees
• Horizontal gene transfer
• Bayesian methods
• Fossil integration
• Uncertainty
• Diversification by itself
• Character-associated diversification

• Phylocom (also related R packages about ecology and phylogenetics)

• PhyloSort
• CONSERVE IV
• Brownie
• TreEvo

Review of ongoing projects

• EOT: https://pods.iplantcollaborative.org/wiki/display/iptol/EOT
• Stretching models:https://pods.iplantcollaborative.org/wiki/display/iptol/Stretching+models
• DataMatch:https://pods.iplantcollaborative.org/wiki/display/iptol/DataMatch
• Ancestral State Reconstruction by Maximum Parsimony:https://pods.iplantcollaborative.org/wiki/display/iptol/ASR-MP