TR Dev Resources

People

Mailing list: reconcil-wg@iplantcollaborative.org
Jim Leebens-Mack (jleebensmack@plantbio.uga.edu)
Todd Vision (tjv@bio.unc.edu)
Sheldon McKay (sheldon.mckay@gmail.com)
Jamie Estill (jamesestill@gmail.com)
Naim Matasci (nmatasci@iplantcollaborative.org)
Juan Antonio "Ray" Raygoza Garay (raygozag@email.arizona.edu)
Daniel Packer (dp@danielpacker.org)
John Kerry (john@uga.edu)

IM

https://pods.iplantcollaborative.org/wiki/display/systems/Jabber-XMPP+server

Meeting times

Working group biweeky meeting

TBD (Please fill in the Poll: http://doodle.com/3ey83i7aih2c2krc)

Wiki

General information

https://pods.iplantcollaborative.org/

iPlant Tree of Life (iPToL)

https://pods.iplantcollaborative.org/wiki/display/iptol/Home

Tree reconciliation

https://pods.iplantcollaborative.org/wiki/display/iptol/Tree+Reconciliation

TR Earlier development

https://pods.iplantcollaborative.org/wiki/display/IP/TR

TR 1.0 Architecture

https://pods.iplantcollaborative.org/wiki/display/iptol/1.0+Architecture

Jira

TR Task and issues Tracking

https://pods.iplantcollaborative.org/jira/browse/TR

Tree viewer

https://pods.iplantcollaborative.org/jira/browse/BTV

Repositories

Public snapshot

https://github.com/iPlantCollaborativeOpenSource
(please use to install)

Database, database scripts and pipeline (SVN)

http://svn.iplantcollaborative.org/iptol/tree_reconciliation/

API and services (Git)

ssh://projects.iplantcollaborative.org/repo/services/iplant-treerec.git
(how to use: https://pods.iplantcollaborative.org/wiki/display/coresw/Development+Repository+Information)

Servers

Dev

The dev database is hosted on votan:

ssh://votan.iplantcollaborative.org

The UI and database feeding the UI are hosted at: http://ripley.iplantcollaborative.org/

Staging/Preview

http://testbed235.iplantc.org/tr-standalone/ 

http://tr.iplantcollaborative.org/

Library

http://www.mendeley.com/groups/1092031/tree-reconciliation/

This Mendeley hosted library of pdfs related to tree reconciliation is currently only available for collaborators, contact Jamie Estill ((jamesestill@gmail.com) if you would like to be added.