TR_16NOV09
Action Items
- 1kp meeting - the mock-up should be worked on this week so that by next Monday we can have a clear idea of what the mock up will look like.
- Sheldon posted a link to the mock-up so everyone can provide feedback - https://pods.iplantcollaborative.org/wiki/display/iptol/TR_Mock-up
Agenda
- review action items from previous meeting
- discuss 1kp meeting deliverables, agenda and status
- open discussion
Notes
Attendees: Todd Vision, Cecile Ane, Michael Gonzales, Sheldon McKay, Jim Leebens-Mack
John Bowers, Natalie Henriques.
Action Item Review
- If you have not done so please visit the site discussing the mock up and leave your comments there.
- Sheldon – Various groups are working on generating gene tree and species tree, we need to focus on what happens afterwards, what value added analysis people wand and how it fits in the framework.
Review 1KP Meeting deliverables, agenda and Status
- ACTION: The agenda for the meeting should be completed and posted by Wednesday 11/18/09.
- Sheldon – Various groups are working on generating gene tree and species tree, we need to focus on what happens afterwards, what value added analysis people want and how it fits in the framework.
- There are design decisions to be made, there are many ways to present the data to users; look at how to navigate the data.
- Jim – we need to look at how to link genes to species.
- Sheldon – In the initial design phase we should strongly recommend use of the same convention to link gene to species, we should have a consistent way to do it. Michael – We will need a similar language at some point.
- Sheldon – I will check in with Todd and Jim on a daily basis starting on Wednesday. At the meeting it will be a presentation more than a mock-up, this will help the engagement team come up with a better product.
- Michael – The meeting is a week from today, who is handling the logistics of the meeting? I would like to make sure that none of the tactical items fall through the crack.
- Sheldon – Danielle Wilson and been working with Mary Margaret at iPlant on the meeting.
- ACTION: Michael will follow up with Danielle about the meeting logistics.
Open Discussions on:
- Simulation and analysis of real data
- Simulate sequence evolutions
- Sequence simulator tools
- Simulators for simulating trees with duplication event.