PRIMETV

Owned by Sheldon McKay
Last updated: Aug 24, 2009Version comment

Prepared by: Former user (Deleted) and Former user (Deleted)

Tool Name: PrIMETV

Homepage: http://prime.sbc.su.se/primetv/index.html

Platforms: Mac OS X, Linux, Windows

Implementation Language: C++

Documentation/Manual: http://prime.sbc.su.se/primetv/manual.pdf

Purpose: Visualization of reconciled trees

Description:
PrIMETV is a command line program to visualize tree-within-tree phenomena such as gene/species tree reconciliations. The program takes a reconciled tree and the host tree as inputs. A helper program called reconcile is provided to produce a reconciled tree that PrIMETV can read. Output can be produced in a range of formats, such as PostScript, Fig, and SVG. PrIMETV can also directly manipulate important attributes such as color and layout policy.

Inputs: An extended Newick format for reconciled tree. Newick format for host tree.

Outputs: fig, gif, PostScript, SVG, png

Literature:
Sennblad B et al (2007) primetv: a viewer for reconciled trees. BMC Bioinformatics 8, 148

Related Tools: Reconcile