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TE_Tools and Software

TE_Tools and Software

By Sheldon McKay
Oct 19, 2009
  • simmap1.0, a post tree analysis program for making inferences about molecular and morphological character evolution (Mac only).
  • simmap2.0, a post tree analysis software package for stochastically mapping mutations on phylogenies (cross-platform).
  • treetapper, a website for finding tools to better understand biology using phylogentic trees. It also identifies areas where tools are missing and in need of further development.
  • CONTRAST (PHYLIP), Phylogenetic independent contrasts of continuous characters in C. See also [CONTRAST Workflow]
  • PDAP (Mesquite), Phylogenetic independent contrasts of continuous characters Java
  • APE (R), Phylogenetic independent contrasts of continuous characters in R