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miRanda 3.3a


Test Data


Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> miranda



Use these files as input:

  • miRNA.fa as the micro-RNA fasta file
  • mRNA_100.fa as the genomic DNA/RNA fasta

Parameters Used in App

No Use only default parameters to set.

Output File(s)

Expect a bam index file, an idxstat file and a flagstat file as outputs. For the test case, the output files you will find in the example_data directory are sorted.bam.bai, sorted.bam.idxstats, and sorted.bam.flagstatWhen run with the settings as files above you should get a file called 'predictions.txt'. 

Tool Source for App