miRanda 3.3a

miRanda is an algorithm for the detection of potential microRNA target sites in genomic sequences. miRanda reads RNA sequences (such as microRNAs) from file1 and genomic DNA/RNA sequences from file2. Both of these files should be in FASTA format.

Quick Start

To use miRanda, import your data in fasta format.
Resources: https://github.com/mskcc/miRanda
manual: http://cbio.mskcc.org/microrna_data/manual.html

Test Data

Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> miranda

Input File(s)

Use these files as input:

miRNA.fa as the micro-RNA fasta file
mRNA_100.fa as the genomic DNA/RNA fasta

Parameters Used in App

Use only default parameters.

Output File(s)

When run with the settings as files above you should get a file called 'predictions.txt'.

Tool Source for App

https://github.com/mskcc/miRanda