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Nanoqc - 0.9.1

This App runs nanoqc (version 0.9.1) to:

  • Provide quality control tools for long read sequencing data aiming to replicate some of the plots made by fastQC.
  • Creates dynamic plots using bokeh

App Creator

Alyssa Cochran

Quick Start

  • nanoqc 0.9.1 takes one fastq file as input. 



Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> nanoqc0nanoqc 0.9.1

Input File(s)

Use the LomanLabz_PC_Ecoli_K12_R7.3_2549_1_ch8_file30_strand.fq for an example run.