nanoqc 0.91
Nanoqc - 0.9.1
This App runs nanoqc (version 0.9.1) to:
- Provide quality control tools for long read sequencing data aiming to replicate some of the plots made by fastQC.
- Creates dynamic plots using bokeh
App Creator
Alyssa Cochran
Quick Start
- nanoqc 0.9.1 takes one fastq file as input.
- Resources: https://github.com/wdecoster/nanoQC
Test Data
Test data for this app appears directly in the Discovery Environment in the Data window under Community Data -> iplantcollaborative -> example_data -> nanoqc 0.9.1
Input File(s)
Use the LomanLabz_PC_Ecoli_K12_R7.3_2549_1_ch8_file30_strand.fq for an example run.
Parameters Used in App
When the app is run in the Discovery Environment, use the following parameters with the above input file(s) to get the output provided in the section below.
Leave all parameters as default.
Output File(s)
nanoqc 0.9.1 will output a nanoQC.log and a nanoQC.html. nanoQC.html will show your plots in a web browser.