ProgressiveMauve

ProgressiveMauve is a multiple whole genome alignment.

progressiveMauve chloroplast_Aethionema_cordifolium.faa chloroplast_Aethionema_grandiflorum.faa chloroplast_Arabidopsis_thaliana.faa > mauve.alignment Wiki Markup{hidden-data} INCOMPLETE for 0.6 as of 20 Oct 2011. Oliver {hidden-data}

ProgressiveMauve

ProgressiveMauve is a multiple whole genome alignment.

Quick Start

• To use ProgressiveMauve, upload your data in fasta format.
• Resources: documentation

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• Alignment file will be named mauve.alignment. Additional outputs generated are
• Example alignment file generated use the above example input files: mauve.alignment 
  • The command-line for generating the output file from the input files is

  • Code Block
    progressiveMauve chloroplast_Aethionema_cordifolium.faa chloroplast_Aethionema_grandiflorum.faa chloroplast_Arabidopsis_thaliana.faa > mauve.alignment

  • Additional outputs include a .sslist file for all fasta files used in alignment, the alignment backbone and a .bbcols file.

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